RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RPH3ALQ9UNE2 315 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 RASD1Q9Y272 281 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 ASF1AQ9Y294 204 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 CACNG2Q9Y698 323 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 RLFQ13129 1914 aa2.23□□□□□ -2.05
VPS50-219ENST00000495039 LTBP1Q14766 1721 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 TRDCB7Z8K6 153 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 GFYI3L273 518 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 HIP1O00291 1037 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 XPO1O14980 1071 aaKnown RBP2.22□□□□□ -2.05
VPS50-219ENST00000495039 DFNA5O60443 496 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 CA11O75493 328 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 KIAA0754O94854 1291 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 KLF8O95600 359 aaPredicted RBP2.22□□□□□ -2.05
VPS50-219ENST00000495039 GUCA1CO95843 209 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 LGI1O95970 557 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 LGALS2P05162 132 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 RBMY1CP0DJD4 496 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 RPA2P15927 270 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 ATP6V1B2P21281 511 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 PAX7P23759 505 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 PRDX3P30048 256 aaKnown RBP2.22□□□□□ -2.05
VPS50-219ENST00000495039 NUDT1P36639 197 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 P2RY1P47900 373 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 RGS4P49798 205 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 PPT1P50897 306 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 SELENOTP62341 195 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 CBX1P83916 185 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 TGFBR3Q03167 851 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 KLHL30Q0D2K2 578 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 ELP6Q0PNE2 266 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 RIPK1Q13546 671 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 NSUN5P1Q3KNT7 163 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 SLC25A52Q3SY17 297 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 TPGS2Q68CL5 300 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 C11orf71Q6IPW1 123 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 CCDC50Q8IVM0 306 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 FTMTQ8N4E7 242 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 OR4D9Q8NGE8 314 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 OR2T34Q8NGX1 318 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 BRSK1Q8TDC3 778 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 FAM151AQ8WW52 585 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 HTR3CQ8WXA8 447 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 CHCHD10Q8WYQ3 142 aaPredicted RBP2.22□□□□□ -2.05
VPS50-219ENST00000495039 MYDGFQ969H8 173 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 SEC22AQ96IW7 307 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 SENP8Q96LD8 212 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 MBOAT4Q96T53 435 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 MMP26Q9NRE1 261 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 IL36GQ9NZH8 169 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 RNF14Q9UBS8 474 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 SH3BGRL2Q9UJC5 107 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 AK6Q9Y3D8 172 aaKnown RBP2.22□□□□□ -2.05
VPS50-219ENST00000495039 V9GY05 133 aa2.22□□□□□ -2.05
VPS50-219ENST00000495039 HIVEP2P31629 2446 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 GAKO14976 1311 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 SH3TC1Q8TE82 1336 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 NACAE9PAV3 2078 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 IGHV3OR16-13A0A075B7E8 117 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 LRP5LA4QPB2 252 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 GJE1A6NN92 205 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 DCTN6O00399 190 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 BTN3A3O00478 584 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 ANGPT2O15123 496 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 TAPBPO15533 448 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 HCRTR1O43613 425 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 NPIPB7O75200 414 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 UGT2B4P06133 528 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 IGHV4-34P06331 123 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 COX5AP20674 150 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 IMPDH1P20839 514 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 PSMA5P28066 241 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 CALCRP30988 508 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 RFC4P35249 363 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 CTRLP40313 264 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 C10orf120Q5SQS8 335 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 BEND3Q5T5X7 828 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 AGBL2Q5U5Z8 902 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 ZNF571Q7Z3V5 609 aaPredicted RBP2.21□□□□□ -2.06
VPS50-219ENST00000495039 PNKDQ8N490 385 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 NKAPP1Q8N9T2 125 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 OR51S1Q8NGJ8 323 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 OR1F12Q8NHA8 337 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 TRMT10AQ8TBZ6 339 aaKnown RBP2.21□□□□□ -2.06
VPS50-219ENST00000495039 MAIP1Q8WWC4 291 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 RDH5Q92781 318 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 EFHD2Q96C19 240 aaPredicted RBP2.21□□□□□ -2.06
VPS50-219ENST00000495039 RPUSD4Q96CM3 377 aaKnown RBP2.21□□□□□ -2.06
VPS50-219ENST00000495039 PELI1Q96FA3 418 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 TBX15Q96SF7 602 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 TSG101Q99816 390 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 NRIP2Q9BQI9 281 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 NXF3Q9H4D5 531 aaKnown RBP2.21□□□□□ -2.06
VPS50-219ENST00000495039 FOLH1BQ9HBA9 442 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 POPDC2Q9HBU9 364 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 MTRF1LQ9UGC7 380 aaKnown RBP2.21□□□□□ -2.06
VPS50-219ENST00000495039 PCSK1NQ9UHG2 260 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 ISY1Q9ULR0 285 aaKnown RBP2.21□□□□□ -2.06
VPS50-219ENST00000495039 SNX6Q9UNH7 406 aa2.21□□□□□ -2.06
VPS50-219ENST00000495039 COPS3Q9UNS2 423 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms