RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 P2RY14Q15391 338 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 DUSP6Q16828 381 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TMEM151BQ8IW70 566 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 MR1Q95460 341 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 NDUFB11Q9NX14 153 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TRDV1A0A1B0GX56 115 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 PPM1BO75688 479 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 PLGP00747 810 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 SPARCP09486 303 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 CPMP14384 443 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 UGT2B7P16662 529 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 GDNFP39905 211 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 REEP5Q00765 189 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TCTN1Q2MV58 587 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 GSG1LQ6UXU4 331 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 C17orf107Q6ZR85 190 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TMEM239Q8WW34 195 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 HHATLQ9HCP6 504 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 ASIC5Q9NY37 505 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 A0A0A6YYJ9 748 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 GPR75O95800 540 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 HTR4Q13639 388 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 ARFRP1Q13795 201 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 DCST2Q5T1A1 773 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TCEAL3Q969E4 200 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 C4orf36Q96KX1 117 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TRAPPC4Q9Y296 219 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 HRH3Q9Y5N1 445 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TRAV18A0A075B6X5 111 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 NAT2P11245 290 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ELAVL4P26378 380 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 IFITM2Q01629 132 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 FGL1Q08830 312 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 SLC14A1Q13336 389 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 RPL13AP3Q6NVV1 102 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 MSRB3Q8IXL7 192 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 TBC1D29Q9UFV1 150 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 C17orf105B2RV13 164 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 OLFM2O95897 454 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 GYPBP06028 91 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ELK1P19419 428 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 NR0B1P51843 470 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 SNRPGP62308 76 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 PUS10Q3MIT2 529 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 BEX5Q5H9J7 111 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 KRBOX4Q5JUW0 171 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 SFXN4Q6P4A7 337 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 LYPD8Q6UX82 237 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ZMYND19Q96E35 227 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF576Q9H609 170 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 FBXL2Q9UKC9 423 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 CLDN20P56880 219 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF169Q14929 603 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 SGCBQ16585 318 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF385BQ569K4 471 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ENTPD8Q5MY95 495 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 HACD4Q5VWC8 232 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 TMEM215Q68D42 235 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF619Q8N2I2 560 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 OR6N1Q8NGY5 312 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 PATE1Q8WXA2 126 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ACOT11Q8WXI4 607 aaPredicted RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 KCTD12Q96CX2 325 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 AMDHD1Q96NU7 426 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF559Q9BR84 538 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 DEFB126Q9BYW3 111 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 SPHK1Q9NYA1 384 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ADAM29Q9UKF5 820 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 MED16Q9Y2X0 877 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 MEMO1Q9Y316 297 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ZFC3H1O60293 1989 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 CD38P28907 300 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 AQP2P41181 271 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ADPRHP54922 357 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 MAT1AQ00266 395 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 SYT14P1Q58G82 188 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ABHD17CQ6PCB6 329 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 PTOV1Q86YD1 416 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 BRIX1Q8TDN6 353 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 PELOQ9BRX2 385 aaKnown RBP15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 ACOXLQ9NUZ1 547 aa15.16■□□□□ 0.02
CCDC88B-209ENST00000494080 A8MVJ9 347 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ELOAQ14241 798 aaKnown RBP15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 YIF1BQ5BJH7 314 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 DNM1P34Q6PK57 102 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 MFSD9Q8NBP5 474 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 OR13H1Q8NG92 308 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 THAP4Q8WY91 577 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 MSLNLQ96KJ4 702 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 MEIS3P1A6NDR6 274 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ZAR1LA6NP61 321 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 TGM6O95932 706 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 AMY2AP04746 511 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 PIPP12273 146 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF41P51814 821 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ACTA2P62736 377 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 ACTG2P63267 376 aa15.15■□□□□ 0.02
CCDC88B-209ENST00000494080 TEX261Q6UWH6 196 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms