RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PIM3Q86V86 326 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 LDLRAD3Q86YD5 345 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 LRRC18Q8N456 261 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 OR2I1PQ8NGU4 316 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 DNAJB8Q8NHS0 232 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 CAMK1GQ96NX5 476 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 PFDN5Q99471 154 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 GPR61Q9BZJ8 451 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 PRDM13Q9H4Q3 707 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 C14orf105Q9NVL8 296 aa7.09□□□□□ -1.28
USP4-211ENST00000485450 EXO1Q9UQ84 846 aaKnown RBP7.09□□□□□ -1.28
USP4-211ENST00000485450 TDRD6O60522 2096 aaKnown RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 RGS11O94810 467 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 AKR7A3O95154 331 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 KIR3DL2P43630 455 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 VSX2P58304 361 aaPredicted RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 RPS7P62081 194 aaKnown RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 MAP4K2Q12851 820 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 TSNQ15631 228 aaKnown RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 ISXQ2M1V0 245 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 TMEM88Q6PEY1 159 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 MBOAT1Q6ZNC8 495 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 OR1S1Q8NH92 325 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 SCARB1Q8WTV0 552 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 CCDC3Q9BQI4 270 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 NCOR1P1Q9H4R4 102 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 GTF2A1LQ9UNN4 478 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 A0A0G2JPF8 293 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 HNRNPCL3B7ZW38 293 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 IFNGP01579 166 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 HIST1H2AGP0C0S8 130 aaPredicted RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 HNRNPCL4P0DMR1 293 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 RAB3BP20337 219 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 HIST1H2ADP20671 130 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 MST1P26927 711 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 PDHA2P29803 388 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 BTCP35070 178 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 LSSP48449 732 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 GPR143P51810 404 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 DEFA6Q01524 100 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 ABHD18Q0P651 414 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 MLLT11Q13015 90 aaPredicted RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 GPR18Q14330 331 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 B3GNTL1Q67FW5 361 aaPredicted RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 HIST2H2AA3Q6FI13 130 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 CFAP161Q6P656 301 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 LCTLQ6UWM7 567 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 DPPA2Q7Z7J5 298 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 CBLN2Q8IUK8 224 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 FBXO39Q8N4B4 442 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 NKAPQ8N5F7 415 aaKnown RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 C12orf45Q8N5I9 185 aaPredicted RBP7.08□□□□□ -1.28
USP4-211ENST00000485450 EID2Q8N6I1 236 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 OR9Q1Q8NGQ5 310 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 OR6X1Q8NH79 312 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 MOSPD2Q8NHP6 518 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 METTL6Q8TCB7 284 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 HIST1H2AHQ96KK5 128 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 HIST1H2AJQ99878 128 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 JAM3Q9BX67 310 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 COLEC10Q9Y6Z7 277 aa7.08□□□□□ -1.28
USP4-211ENST00000485450 IGKV1-8A0A0C4DH67 115 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 ACOD1A6NK06 481 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 KERAO60938 352 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 GUCA1CO95843 209 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 CRHP06850 196 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 PAICSP22234 425 aaKnown RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 AK4P27144 223 aaPredicted RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 LPAL2Q16609 132 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 TTLL9Q3SXZ7 439 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 LRIF1Q5T3J3 769 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 LIPNQ5VXI9 398 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 RNLSQ5VYX0 342 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 KRT78Q8N1N4 520 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 ZNF454Q8N9F8 522 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 OR4A15Q8NGL6 344 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 TRMT10AQ8TBZ6 339 aaKnown RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 FBXO17Q96EF6 278 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 SLC26A1Q9H2B4 701 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 SLC6A13Q9NSD5 602 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 POFUT2Q9Y2G5 429 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 POLR3HQ9Y535 204 aaPredicted RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 NUBP2Q9Y5Y2 271 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 ARHGEF17Q96PE2 2063 aaPredicted RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 A0A087WV48 116 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 OR6C68A6NDL8 312 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 TLCD2A6NGC4 264 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 MPZL2O60487 215 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 RPN2P04844 631 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 S100A9P06702 114 aaKnown RBP7.07□□□□□ -1.28
USP4-211ENST00000485450 EPORP19235 508 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 CD96P40200 585 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 BDKRB1P46663 353 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 VEGFCP49767 419 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 CCL7P80098 99 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 PCBP2Q15366 365 aaKnown RBP eCLIP7.07□□□□□ -1.28
USP4-211ENST00000485450 DEFB133Q30KQ1 61 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 FAM174BQ3ZCQ3 159 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 GGTA1PQ4G0N0 100 aa7.07□□□□□ -1.28
USP4-211ENST00000485450 ZRANB3Q5FWF4 1079 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms