RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 FN3KQ9H479 309 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 TNFRSF10DQ9UBN6 386 aa16.69■□□□□ 0.26
COL9A3-205ENST00000466192 SAGE2PA6NJ88 616 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 PAICSP22234 425 aaKnown RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 NOS3P29474 1203 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 MPLP40238 635 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 SLC9A3P48764 834 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 EMP2P54851 167 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 IFITM3Q01628 133 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZFP36L1Q07352 338 aaKnown RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF528Q3MIS6 628 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 C16orf47Q6ZP98 133 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 RTL4Q6ZR62 310 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 MARCH3Q86UD3 253 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 CENPSQ8N2Z9 138 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 LRRC17Q8N6Y2 441 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 BMPERQ8N8U9 685 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 PTP4A1Q93096 173 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ARRDC1-AS1Q9H2J1 176 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 TOR4AQ9NXH8 423 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 COL27A1Q8IZC6 1860 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 IGKV1D-42A0A075B6H8 117 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 PRR23D1E9PI22 279 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 MEN1O00255 615 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 IGHA1P01876 353 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 PRR23D2P0DMB1 279 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF28P17035 718 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 S100A5P33763 92 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 SLC16A1P53985 500 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 PNLIPRP2P54317 469 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF117Q03924 483 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 IL11RAQ14626 422 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF791Q3KP31 576 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF362Q5T0B9 420 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 MEPCEQ7L2J0 689 aaKnown RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ATG4DQ86TL0 474 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 CYB561A3Q8NBI2 242 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 SLC37A3Q8NCC5 494 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF485Q8NCK3 441 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 PSD4Q8NDX1 1056 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 METTL21AQ8WXB1 218 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 SGTBQ96EQ0 304 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 KCNS3Q9BQ31 491 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 WDR77Q9BQA1 342 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF649Q9BS31 505 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 LAT2Q9GZY6 243 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 NUAK2Q9H093 628 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ERVK13-1Q9NX77 482 aa16.68■□□□□ 0.26
COL9A3-205ENST00000466192 ALG1L2C9J202 215 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 ZNF670-ZNF695F2Z2N8 137 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 PLD2O14939 933 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 LALBAP00709 142 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 RPS7P62081 194 aaKnown RBP16.67■□□□□ 0.26
COL9A3-205ENST00000466192 RPS25P62851 125 aaKnown RBP16.67■□□□□ 0.26
COL9A3-205ENST00000466192 BPHLQ86WA6 291 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-205ENST00000466192 CHPT1Q8WUD6 406 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 UFD1Q92890 307 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 TM9SF2Q99805 663 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 SLX1AQ9BQ83 275 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 OR51V1Q9H2C8 321 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 TXNL4BQ9NX01 149 aaKnown RBP16.67■□□□□ 0.26
COL9A3-205ENST00000466192 ITGB1BP2Q9UKP3 347 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 GPR179Q6PRD1 2367 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 ELOA3DA6NLF2 546 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-205ENST00000466192 RIIAD1A6NNX1 92 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 GMFGO60234 142 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 CLUP10909 449 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 CCL4P13236 92 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 TRA2AQ13595 282 aaKnown RBP eCLIP16.67■□□□□ 0.26
COL9A3-205ENST00000466192 TPBGQ13641 420 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 CRMP1Q14194 572 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 ANGPT1Q15389 498 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 ELOA3BQ3SY89 546 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 C22orf42Q6IC83 251 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 PAPD4Q6PIY7 484 aaKnown RBP16.67■□□□□ 0.26
COL9A3-205ENST00000466192 KLHL36Q8N4N3 616 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 AGBL5Q8NDL9 886 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 ELOA3Q8NG57 546 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 C1GALT1C1Q96EU7 318 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 TPK1Q9H3S4 243 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 SNTG1Q9NSN8 517 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 FBXL4Q9UKA2 621 aa16.67■□□□□ 0.26
COL9A3-205ENST00000466192 A0A1W2PQD3 144 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 HCRTR2O43614 444 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 NDUFB5O43674 189 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 OCM2P0CE71 109 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 OCMP0CE72 109 aaPredicted RBP16.66■□□□□ 0.26
COL9A3-205ENST00000466192 SLC6A6P31641 620 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 MXD1Q05195 221 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 SPRYD4Q8WW59 207 aaPredicted RBP16.66■□□□□ 0.26
COL9A3-205ENST00000466192 KISS1RQ969F8 398 aaPredicted RBP16.66■□□□□ 0.26
COL9A3-205ENST00000466192 TBX5Q99593 518 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 CRB3Q9BUF7 120 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 BARHL1Q9BZE3 327 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 SLC26A1Q9H2B4 701 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 QPCTLQ9NXS2 382 aa16.66■□□□□ 0.26
COL9A3-205ENST00000466192 PPIEQ9UNP9 301 aaKnown RBP16.66■□□□□ 0.26
COL9A3-205ENST00000466192 FUOMA2VDF0 154 aa16.65■□□□□ 0.26
COL9A3-205ENST00000466192 C12orf71A8MTZ7 269 aa16.65■□□□□ 0.26
COL9A3-205ENST00000466192 J3QRE1 110 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms