RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FCRLBQ6BAA4 426 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 DNM1P46Q6ZS02 220 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ZNF547Q8IVP9 402 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 CCDC116Q8IYX3 515 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 OR5AR1Q8NGP9 310 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 PFN4Q8NHR9 129 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 SLC2A12Q8TD20 617 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 MYLIPQ8WY64 445 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ELAC1Q9H777 363 aaKnown RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 IL21Q9HBE4 155 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 EQTNQ9NQ60 294 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 CALML5Q9NZT1 146 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 CTSFQ9UBX1 484 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ERVK-19Q9WJR5 959 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 SLC35A3Q9Y2D2 325 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 TSPAN11A1L157 253 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 H7BY64 318 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ACOT7O00154 380 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 KPNA3O00505 521 aaPredicted RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 GRM6O15303 877 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 APOC1P02654 83 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 CLTBP09497 229 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 UBBP0CG47 229 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 UBCP0CG48 685 aaKnown RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 ERGP11308 486 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 MGMTP16455 207 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ZNF136P52737 540 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 PDX1P52945 283 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 HCCSP53701 268 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 RPS27AP62979 156 aaKnown RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 UBA52P62987 128 aaKnown RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 CRMP1Q14194 572 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 MPPED2Q15777 294 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 SPOUT1Q5T280 376 aaKnown RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 PWWP2BQ6NUJ5 590 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ZNF613Q6PF04 617 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 DPPA4Q7L190 304 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 RAB11FIP2Q7L804 512 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 RNF180Q86T96 592 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 MUC20Q8N307 709 aaPredicted RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 CYB561A3Q8NBI2 242 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 SYNPRQ8TBG9 265 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 CXorf40AQ8TE69 158 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 SLC25A28Q96A46 364 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 RAD51AP1Q96B01 352 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 TCEAL4Q96EI5 215 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 SCLYQ96I15 445 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 PRAP1Q96NZ9 151 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 OR2AG1Q9H205 316 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 NOX4Q9NPH5 578 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 POT1Q9NUX5 634 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ASF1AQ9Y294 204 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ZNF443Q9Y2A4 671 aaPredicted RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 RASGRP1O95267 797 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 EGFP01133 1207 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 GYPBP06028 91 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 CNR1P21554 472 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 CDK2P24941 298 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 PSMB5P28074 263 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 MNDAP41218 407 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 SSR2P43308 183 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 CLDN12P56749 244 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 SIRPAP78324 504 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 SORDQ00796 357 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 SERTAD2Q14140 314 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 FGL2Q14314 439 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 RBMS2Q15434 407 aaKnown RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 ARSIQ5FYB1 569 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ELP2Q6IA86 826 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 TSSK4Q6SA08 328 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 C11orf96Q7Z7L8 435 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 VN1R2Q8NFZ6 395 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 C1orf216Q8TAB5 229 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 STK35Q8TDR2 534 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ASB12Q8WXK4 309 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 MOAP1Q96BY2 351 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ARMC5Q96C12 935 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 HAVCR1Q96D42 359 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 S100A16Q96FQ6 103 aaKnown RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 PDCD1LG2Q9BQ51 273 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 SGIP1Q9BQI5 828 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 DPEP2Q9H4A9 486 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ZNF768Q9H5H4 540 aaKnown RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 CCDC86Q9H6F5 360 aaKnown RBP9.86□□□□□ -0.83
USP54-204ENST00000422491 SAGE1Q9NXZ1 904 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 CLDND1Q9NY35 253 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 PLEKHM1Q9Y4G2 1056 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 MYOFQ9NZM1 2061 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 TRAV14DV4A0A0A6YYC5 116 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ZNF879B4DU55 563 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 GPR31O00270 319 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 CD1AP06126 327 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 GP1BAP07359 652 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 CTSLP07711 333 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ELFN1P0C7U0 828 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ACHEP22303 614 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 ADH7P40394 386 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 MC3RP41968 323 aa9.86□□□□□ -0.83
USP54-204ENST00000422491 POLR2GP62487 172 aaKnown RBP eCLIP9.86□□□□□ -0.83
USP54-204ENST00000422491 PRR5P85299 388 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms