RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NOX1Q9Y5S8 564 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 ARHGEF17Q96PE2 2063 aaPredicted RBP7.68□□□□□ -1.18
USP54-203ENST00000418501 LOC100506127A0A0U1RQW1 187 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 HSPB2A8KAH6 182 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 WWP2O00308 870 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 RNF13O43567 381 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 SUSD5O60279 629 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 ZNF432O94892 652 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 PPP1R3DO95685 299 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 RECKO95980 971 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 ACAA2P42765 397 aaKnown RBP7.68□□□□□ -1.18
USP54-203ENST00000418501 CTXN1P60606 82 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 SKP2Q13309 424 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 HSPB2Q16082 182 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 TSTQ16762 297 aaKnown RBP7.68□□□□□ -1.18
USP54-203ENST00000418501 ABHD17BQ5VST6 288 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 SLC22A10Q63ZE4 541 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 TUBA3EQ6PEY2 450 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 C9orf40Q8IXQ3 194 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 MS4A15Q8N5U1 240 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 OR10H5Q8NGA6 315 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 OR13C2Q8NGS9 318 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 SLC25A36Q96CQ1 311 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 RBP7Q96R05 134 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 POTEKPQ9BYX7 375 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 TIGARQ9NQ88 270 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 FKBP14Q9NWM8 211 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 SIGLEC7Q9Y286 467 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 ARPC4-TTLL3A0A0A6YYG9 625 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 PRR33A8MZF0 331 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 LINC01387J3KSC0 135 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 AGRPO00253 132 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 PRKYO43930 277 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 CLPXO76031 633 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 SCG5P05408 212 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 CFL1P23528 166 aaKnown RBP7.68□□□□□ -1.18
USP54-203ENST00000418501 HTR2AP28223 471 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 ANKRD34AQ69YU3 496 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 PLBD1Q6P4A8 553 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 IL22RA1Q8N6P7 574 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 FAM71CQ8NEG0 241 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 OR5J2Q8NH18 312 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 MCFD2Q8NI22 146 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 DUSP19Q8WTR2 217 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 FSCN3Q9NQT6 498 aa7.68□□□□□ -1.18
USP54-203ENST00000418501 H3BMQ9 156 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 ZNF208O43345 1280 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 CTSBP07858 339 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 ADH6P28332 368 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 CSNK2A1P68400 391 aaPredicted RBP7.67□□□□□ -1.18
USP54-203ENST00000418501 SPANXN2Q5MJ10 180 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 SLC6A19Q695T7 634 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 Q6ZPB1 254 aaPredicted RBP7.67□□□□□ -1.18
USP54-203ENST00000418501 LANCL3Q6ZV70 420 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 COX15Q7KZN9 410 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 SHFQ7M4L6 423 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 OR52E2Q8NGJ4 325 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 LGALS12Q96DT0 336 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 C1GALT1C1Q96EU7 318 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 SNX18Q96RF0 628 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 TNFRSF13CQ96RJ3 184 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 DOK1Q99704 481 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 CPNE5Q9HCH3 593 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 FBXO34Q9NWN3 711 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 IER3IP1Q9Y5U9 82 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 R4GN57 208 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 LOC102723996A0A087X1L8 192 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 H3BMH7 237 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 PIP5K1CO60331 668 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 SERPINI2O75830 405 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 HLA-DQA2P01906 255 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 OR2T7P0C7T2 308 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 ADORA3P0DMS8 318 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 ZNF823P16415 610 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 RORCP51449 518 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 NFATC3Q12968 1075 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 PRAMEF17Q5VTA0 474 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 C1orf140Q5VVS0 124 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 ACSM5Q6NUN0 579 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 MRPL14Q6P1L8 145 aaKnown RBP7.67□□□□□ -1.18
USP54-203ENST00000418501 DBX2Q6ZNG2 339 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 ATG4DQ86TL0 474 aaPredicted RBP7.67□□□□□ -1.18
USP54-203ENST00000418501 NANOGP1Q8N7R0 232 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 OR2T27Q8NH04 317 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 THAP4Q8WY91 577 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 DCSTAMPQ9H295 470 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 BOKQ9UMX3 212 aaPredicted RBP7.67□□□□□ -1.18
USP54-203ENST00000418501 TMEM184BQ9Y519 407 aaPredicted RBP7.67□□□□□ -1.18
USP54-203ENST00000418501 LY6G6EA0A0G2JKS1 128 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 IGKV1D-16P01601 117 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 APOA1P02647 267 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 SERPINA7P05543 415 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 KRT8P05787 483 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 RGS6P49758 472 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 DNASE1L3Q13609 305 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 SMN1Q16637 294 aaKnown RBP7.67□□□□□ -1.18
USP54-203ENST00000418501 COL28A1Q2UY09 1125 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 POMZP3Q6PJE2 187 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 SLC46A3Q7Z3Q1 461 aa7.67□□□□□ -1.18
USP54-203ENST00000418501 OR51G2Q8NGK0 314 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms