RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ALG5Q9Y673 324 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 TEX13CA0A0J9YWL9 993 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 OR5K3A6NET4 321 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 C17orf105B2RV13 164 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 RGS9O75916 674 aaPredicted RBP12.32□□□□□ -0.44
VPS54-203ENST00000409558 SBK2P0C263 348 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 IFITM2Q01629 132 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 TEKQ02763 1124 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 SFRP4Q6FHJ7 346 aaPredicted RBP12.32□□□□□ -0.44
VPS54-203ENST00000409558 LEG1Q6P5S2 330 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 TSTD1Q8NFU3 115 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 LRRC61Q9BV99 259 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 FOXQ1Q9C009 403 aa12.32□□□□□ -0.44
VPS54-203ENST00000409558 IGHV5-51A0A0C4DH38 117 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 BRINP1O60477 761 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 HK1P19367 917 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 CCR6P51684 374 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 GPR50Q13585 617 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 EOGTQ5NDL2 527 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 VASNQ6EMK4 673 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 HEPHL1Q6MZM0 1159 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 YIPF7Q8N8F6 280 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 C19orf47Q8N9M1 422 aaKnown RBP12.31□□□□□ -0.44
VPS54-203ENST00000409558 ABHD4Q8TB40 342 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 TRPV5Q9NQA5 729 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 NUDT15Q9NV35 164 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 IQCMA0A1B0GVH7 501 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 ELOA3DA6NLF2 546 aaPredicted RBP12.31□□□□□ -0.44
VPS54-203ENST00000409558 CLDN4O14493 209 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 BHLHE40O14503 412 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 OR8G3PP0DMU2 310 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 LIMK1P53667 647 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 KIAA1024LP59773 190 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 ELOA3BQ3SY89 546 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 FAM69BQ5VUD6 431 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 C1QL3Q5VWW1 255 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 MED25Q71SY5 747 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 SAMD14Q8IZD0 417 aaPredicted RBP12.31□□□□□ -0.44
VPS54-203ENST00000409558 ELOA3Q8NG57 546 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 A3GALT2U3KPV4 340 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 PCDH15Q96QU1 1955 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 HCRTR2O43614 444 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 ETV6P41212 452 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 GLYR1Q49A26 553 aaPredicted RBP12.31□□□□□ -0.44
VPS54-203ENST00000409558 MZT2AQ6P582 158 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 CD300LDQ6UXZ3 194 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 NPSR1Q6W5P4 371 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 SCAIQ8N9R8 606 aa12.31□□□□□ -0.44
VPS54-203ENST00000409558 MKKSQ9NPJ1 570 aaPredicted RBP12.31□□□□□ -0.44
VPS54-203ENST00000409558 MEIS3P1A6NDR6 274 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 RNH1P13489 461 aaKnown RBP12.3□□□□□ -0.44
VPS54-203ENST00000409558 LTBRP36941 435 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 OR6C4Q8NGE1 309 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 OR51Q1Q8NH59 317 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 UPRTQ96BW1 309 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 TRDV1A0A1B0GX56 115 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 A6NCN8 305 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 AGR2O95994 175 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 MT-ND4P03905 459 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 RPS5P46782 204 aaKnown RBP12.3□□□□□ -0.44
VPS54-203ENST00000409558 PPP3R1P63098 170 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 EFNB1P98172 346 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 ADAM15Q13444 863 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 SLC35D2Q76EJ3 337 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 THEM6Q8WUY1 208 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 THAP4Q8WY91 577 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 TM4SF19Q96DZ7 209 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 CHIAQ9BZP6 476 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 TMEM72A0PK05 275 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 PRAMEF26H0Y7S4 382 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 TFP02787 698 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 PON3Q15166 354 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 CD226Q15762 336 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 LINGO2Q7L985 606 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 ST6GAL2Q96JF0 529 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 OR10A5Q9H207 317 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 HSPB11Q9Y547 144 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 INMT-MINDY4F8WBC2 141 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 PROS1P07225 676 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 SNTA1Q13424 505 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 DMRTC1Q5HYR2 192 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 SFXN4Q6P4A7 337 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 LINC00299Q6ZSB3 139 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 GID4Q8IVV7 300 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 NT5CQ8TCD5 201 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 MOGAT1Q96PD6 335 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 S1PR5Q9H228 398 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 KCNN2Q9H2S1 579 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 LMAN1LQ9HAT1 526 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 COPS3Q9UNS2 423 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 SLC35A3Q9Y2D2 325 aa12.3□□□□□ -0.44
VPS54-203ENST00000409558 SPTY2D1-AS1A0A0U1RR47 76 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 CCDC85CA6NKD9 419 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 MAS1P04201 325 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 DRD1P21728 446 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 GDI2P50395 445 aaKnown RBP12.29□□□□□ -0.44
VPS54-203ENST00000409558 ABHD1Q96SE0 405 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 THAP7Q9BT49 309 aaPredicted RBP12.29□□□□□ -0.44
VPS54-203ENST00000409558 MCCC2Q9HCC0 563 aa12.29□□□□□ -0.44
VPS54-203ENST00000409558 DUSP22Q9NRW4 184 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms