RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 BOCQ9BWV1 1114 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 POLDIP3Q9BY77 421 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 KLHL9Q9P2J3 617 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 RNF11Q9Y3C5 154 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 MYH4Q9Y623 1939 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 IGHV1OR21-1A0A087WYE8 117 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ANKRD61A6NGH8 418 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 TARM1B6A8C7 271 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PIP5K1BO14986 540 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 SC5DO75845 299 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CRYAAP02489 173 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF182P17025 639 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PKLRP30613 574 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 DCTP40126 519 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 EIF1P41567 113 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 TAS2R43P59537 309 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PCBD1P61457 104 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 SCARB2Q14108 478 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 C3P1Q6ZMU1 363 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 Q6ZNB5 142 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 BEND4Q6ZU67 534 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 AAED1Q7RTV5 226 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF676Q8N7Q3 588 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ACOT11Q8WXI4 607 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 BTBD2Q9BX70 525 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PCDHAC1Q9H158 963 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 NXF5Q9H1B4 397 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ACSS3Q9H6R3 686 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ZDHHC11Q9H8X9 412 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 TVP23BQ9NYZ1 205 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 EXTL2Q9UBQ6 330 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CLEC4EQ9ULY5 219 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 LOC102724200A0A096LPH7 203 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 HMX3A6NHT5 357 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 SPDEFO95238 335 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 BCHEP06276 602 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 TPT1P13693 172 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CPN1P15169 458 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CDK2P24941 298 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CSNK1A1P48729 337 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 NDUFA6P56556 154 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PRDX1Q06830 199 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ZXDCQ2QGD7 858 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PIGGQ5H8A4 983 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 UGT2A3Q6UWM9 527 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PDSS2Q86YH6 399 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 Q8N402 240 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 GDPD1Q8N9F7 314 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 SIMC1Q8NDZ2 872 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 P2RY12Q9H244 342 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 SLC38A1Q9H2H9 487 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PATZ1Q9HBE1 687 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 IL17CQ9P0M4 197 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ZMIZ1Q9ULJ6 1067 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PRAMEF25A6NGN4 478 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PIP5K1CO60331 668 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 NOBOXO60393 691 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 DNAJB6O75190 326 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 GLCEO94923 617 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 DIRAS1O95057 198 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 MT-CO2P00403 227 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 BDKRB2P30411 391 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 TGM4P49221 684 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CYCSP99999 105 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 KRTCAP3Q53RY4 240 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 UBAP2Q5T6F2 1119 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 OR52R1Q8NGF1 315 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 NDNFQ8TB73 568 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 KISS1RQ969F8 398 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ELMOD3Q96FG2 381 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF75AQ96N20 296 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PEBP4Q96S96 227 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 VN1R3Q9BXE9 311 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 PPP1R14DQ9NXH3 145 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 COL11A2P13942 1736 aaPredicted RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ARFGEF1Q9Y6D6 1849 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 LRP5LA4QPB2 252 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF207O43670 478 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 RBBP9O75884 186 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CD3EP07766 207 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 UBBP0CG47 229 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 UBCP0CG48 685 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 NR4A2P43354 598 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 POLR2HP52434 150 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 NUDT6P53370 316 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 RANP62826 216 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 DPTQ07507 201 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 GAS6Q14393 721 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 KCNJ8Q15842 424 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 UGT3A2Q3SY77 523 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 IFI44LQ53G44 452 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 CCL4L1Q8NHW4 92 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 SIX2Q9NPC8 291 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 USP36Q9P275 1121 aaKnown RBP6.79□□□□□ -1.32
SCN9A-202ENST00000409435 B4E171 279 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 ACTL6BO94805 426 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 GADD45GO95257 159 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 OPN1LWP04000 364 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 FAM87AP0C7U9 286 aa6.79□□□□□ -1.32
SCN9A-202ENST00000409435 UBL4AP11441 157 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms