RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 UBXN7O94888 489 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 KLHL18O94889 574 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 SLC16A8O95907 504 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 HPP00738 406 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 MT-ND4P03905 459 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 IFNGR1P15260 489 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 CD53P19397 219 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 TEAD1P28347 426 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 CD96P40200 585 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 MEOX2P50222 304 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 CCR5P51681 352 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 TSC22D1Q15714 1073 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 SYTL3Q4VX76 610 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 FAM74A3Q4VXF1 159 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 IQCHQ86VS3 1027 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 AMZ2Q86W34 360 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 CAMKVQ8NCB2 501 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 OR4D10Q8NGI6 311 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 OR51Q1Q8NH59 317 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 NEIL2Q969S2 332 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 RGMAQ96B86 450 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 DMRTA2Q96SC8 542 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 FNDC11Q9BVV2 318 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 IFT27Q9BW83 186 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 ZCCHC2Q9C0B9 1178 aaKnown RBP10.29□□□□□ -0.76
CUX1-204ENST00000393824 LRRN3Q9H3W5 708 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 EGLN3Q9H6Z9 239 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 BEX1Q9HBH7 125 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 MBD2Q9UBB5 411 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 SEC14L3Q9UDX4 400 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 CAMK2AQ9UQM7 478 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 DTX4Q9Y2E6 619 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 SLC6A5Q9Y345 797 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 NPFFR2Q9Y5X5 522 aa10.29□□□□□ -0.76
CUX1-204ENST00000393824 ARHGEF17Q96PE2 2063 aaPredicted RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 PRAMEF26H0Y7S4 382 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 PPP3CBP16298 524 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 PSMB1P20618 241 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 ACADLP28330 430 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 AKT2P31751 481 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 MAZP56270 477 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 SEC61A1P61619 476 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 PRSS53Q2L4Q9 553 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 ZC3H14Q6PJT7 736 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 BAIAP2L2Q6UXY1 529 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 TMPRSS11BQ86T26 416 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 PAQR7Q86WK9 346 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 OR6V1Q8N148 313 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 GNPDA2Q8TDQ7 276 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 THAP4Q8WY91 577 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 KAT2AQ92830 837 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 LRRC46Q96FV0 321 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 SCARF2Q96GP6 870 aaPredicted RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 SGPP1Q9BX95 441 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 CHIAQ9BZP6 476 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 BCL2L14Q9BZR8 327 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 ZDHHC5Q9C0B5 715 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 CXorf36Q9H7Y0 433 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 NEUROD4Q9HD90 331 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 PRM3Q9NNZ6 103 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 PRMT8Q9NR22 394 aaPredicted RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 SDHAF3Q9NRP4 125 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 TMEM74BQ9NUR3 256 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 BABAM2Q9NXR7 383 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 MGAT4CQ9UBM8 478 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 PLAGL1Q9UM63 463 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 ENTPD4Q9Y227 616 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 TDRD6O60522 2096 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 FAM86C2PA6NEL3 165 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 J3QRE1 110 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 GATCO43716 136 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 SERPIND1P05546 499 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 THEGLP0DJG4 465 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 NPPBP16860 134 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 OR10A3P58181 314 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 LSM11P83369 360 aaKnown RBP eCLIP10.28□□□□□ -0.765e-6■■■□□ 16.8
CUX1-204ENST00000393824 FZD2Q14332 565 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 SLBPQ14493 270 aaKnown RBP eCLIP10.28□□□□□ -0.76
CUX1-204ENST00000393824 METRNLQ641Q3 311 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 GLDNQ6ZMI3 551 aaPredicted RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 TMUB2Q71RG4 321 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 SLC9B2Q86UD5 537 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 C1orf210Q8IVY1 113 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 TBC1D19Q8N5T2 526 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 OR5AR1Q8NGP9 310 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 ZDHHC1Q8WTX9 485 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 SMIM4Q8WVI0 70 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 NR4A3Q92570 626 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 ZNF764Q96H86 408 aaPredicted RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 ZFP3Q96NJ6 502 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 SORBS1Q9BX66 1292 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 SLC6A16Q9GZN6 736 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 ESRP2Q9H6T0 727 aaKnown RBP10.28□□□□□ -0.76
CUX1-204ENST00000393824 SLAMF7Q9NQ25 335 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 MIEF1Q9NQG6 463 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 GPR27Q9NS67 375 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 ACTR10Q9NZ32 417 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 AHSPQ9NZD4 102 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 TAAR2Q9P1P5 351 aa10.28□□□□□ -0.76
CUX1-204ENST00000393824 TBC1D29Q9UFV1 150 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms