RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ZNF45Q02386 682 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 C17orf67Q0P5P2 114 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 OXA1LQ15070 435 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 MED22Q15528 200 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 TRIM16LQ309B1 348 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 ELOA3BQ3SY89 546 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 SLC27A4Q6P1M0 643 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 OPN5Q6U736 354 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 KIRREL2Q6UWL6 708 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 CYP4Z2PQ8N1L4 340 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 TCEANCQ8N8B7 351 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 ELOA3Q8NG57 546 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 OR52L1Q8NGH7 329 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 OR5W2Q8NH69 310 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 BPIFA2Q96DR5 249 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 IP6K3Q96PC2 410 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF426Q9BUY5 554 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 MED17Q9NVC6 651 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 CNIH4Q9P003 139 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 FOXJ2Q9P0K8 574 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 SEC14L4Q9UDX3 406 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 PCDHGB6Q9Y5F9 930 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 CDH10Q9Y6N8 788 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 A0A087WUJ7 227 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 PCNX2A6NKB5 2137 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 M0R129 80 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 SOCS6O14544 535 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 KLF4O43474 513 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 RAD1O60671 282 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 IGF2P01344 180 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 FBXO45P0C2W1 286 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 ITPKBP27987 946 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 RBMS1P29558 406 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 OTX2P32243 289 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 S100A5P33763 92 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 SLC1A3P43003 542 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 GPR4P46093 362 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 P2RX1P51575 399 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF117Q03924 483 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 MLLT11Q13015 90 aaPredicted RBP16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 SPHARQ15513 63 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 MARCH3Q86UD3 253 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 ZBTB46Q86UZ6 589 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 NANOGP1Q8N7R0 232 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 ISYNA1Q9NPH2 558 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 TVP23BQ9NYZ1 205 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 YARS2Q9Y2Z4 477 aaKnown RBP16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 UGT2A1Q9Y4X1 527 aa16.62■□□□□ 0.25
CCDC88C-203ENST00000389856 PNMA8CA0A1B0GUJ8 204 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 PROB1E7EW31 1015 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 SCO2O43819 266 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 CDC40O60508 579 aaKnown RBP eCLIP16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 HCN1O60741 890 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 OR2J2O76002 312 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 RAB36O95755 333 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 BMP7P18075 431 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 MSX1P28360 303 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 DLSTP36957 453 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 RANBP1P43487 201 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 TSTQ16762 297 aaKnown RBP16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 NDUFAF6Q330K2 333 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 FAM69BQ5VUD6 431 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 APOOLQ6UXV4 268 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 LINC00114Q6XXX2 140 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 PPP1R32Q7Z5V6 425 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 ATCAYQ86WG3 371 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 TMEM163Q8TC26 289 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 TMEM234Q8WY98 164 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 FGF11Q92914 225 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 HGDQ93099 445 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 C3orf49Q96BT1 292 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 SPACA9Q96E40 222 aaPredicted RBP16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 TMEM43Q9BTV4 400 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 NDEL1Q9GZM8 345 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 FGF20Q9NP95 211 aaPredicted RBP16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 IL20Q9NYY1 176 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 DNAJC27Q9NZQ0 273 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 EXPH5Q8NEV8 1989 aa16.61■□□□□ 0.25
CCDC88C-203ENST00000389856 A0A075B6Q4 140 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 SPAARA0A1B0GVQ0 90 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 TMEM200CA6NKL6 621 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 PRODHO43272 600 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 NUDT14O95848 222 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 HMGN1P05114 100 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 HSMCR30P0CW71 290 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 SAGP10523 405 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 GP1BBP13224 206 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 CEACAM1P13688 526 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 HTR3AP46098 478 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 FBXW4P57775 412 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 RAB40BQ12829 278 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 NTRK2Q16620 822 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF181Q2M3W8 571 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 SYT14P1Q58G82 188 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF620Q6ZNG0 422 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 BRIX1Q8TDN6 353 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 ARSGQ96EG1 525 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 OPALINQ96PE5 141 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 OR5M11Q96RB7 305 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 RASL10BQ96S79 203 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms