RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ZAR1Q86SH2 424 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 MARCH9Q86YJ5 346 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ZSCAN1Q8NBB4 408 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 UFD1Q92890 307 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 C1GALT1C1Q96EU7 318 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 TRMT61AQ96FX7 289 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 DIRAS2Q96HU8 199 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 TP63Q9H3D4 680 aaPredicted RBP12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ABCB9Q9NP78 766 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 DDX28Q9NUL7 540 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 C2orf92A0A1B0GVN3 265 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 HMX3A6NHT5 357 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 CENPXA8MT69 81 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 TMCC2O75069 709 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 CD63P08962 238 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 HNRNPA0Q13151 305 aaKnown RBP12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ASAH1Q13510 395 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 ZNF79Q15937 498 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 BAK1Q16611 211 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 DECR1Q16698 335 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 GLYR1Q49A26 553 aaPredicted RBP12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 C22orf42Q6IC83 251 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 PAQR6Q6TCH4 344 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 OR6T1Q8NGN1 323 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 RNFT2Q96EX2 444 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 LCORQ96JN0 433 aaPredicted RBP12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 GAL3ST4Q96RP7 486 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 LPAR4Q99677 370 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 DDA1Q9BW61 102 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 NUDT9Q9BW91 350 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 TIGARQ9NQ88 270 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 CHST2Q9Y4C5 530 aa12.08□□□□□ -0.48
SQSTM1-201ENST00000360718 AHCTF1Q8WYP5 2266 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 A0A1W2PQL4 384 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 CCDC182A6NF36 153 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 FAM47E-STBD1D6RA91 191 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 PLD2O14939 933 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 SSX4O60224 188 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 STK17BO94768 372 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 DKK1O94907 266 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 CCNYL3P0C7X3 344 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 DRD5P21918 477 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 RFX2P48378 723 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 PSMD4P55036 377 aaKnown RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 RGS8P57771 180 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 TAS2R41P59536 307 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 IFITM2Q01629 132 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 TRAM2Q15035 370 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 ZFP69Q49AA0 526 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 ATAD3CQ5T2N8 411 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 RFKQ969G6 155 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 MAN2C1Q9NTJ4 1040 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 N6AMT1Q9Y5N5 214 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 NPIPA5A0A0B4J1W7 369 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 A0A1W2PQ09 198 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 FRG2CA6NGY1 282 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 C9orf172C9J069 976 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 NPIPA7E9PJI5 369 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 AP3D1O14617 1153 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 IGKV1D-16P01601 117 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 NPIPA8P0DM63 369 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 NID1P14543 1247 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 RPS4Y1P22090 263 aaKnown RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 AZGP1P25311 298 aaKnown RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 MTNR1AP48039 350 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 CRTC2Q53ET0 693 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 ZMAT1Q5H9K5 638 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 THOC7Q6I9Y2 204 aaKnown RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 ZNF836Q6ZNA1 936 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 RASSF6Q6ZTQ3 369 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 CPEB2Q7Z5Q1 589 aaKnown RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 MRGPREQ86SM8 312 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 SLC7A5P1Q8MH63 180 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 BCORP1Q8N888 145 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 C17orf50Q8WW18 174 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 FGF11Q92914 225 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 TMEM203Q969S6 136 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 NEDD4LQ96PU5 975 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 LMF1Q96S06 567 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 COQ7Q99807 217 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 ARHGDIGQ99819 225 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 ANKRD19PQ9H560 264 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 PLEKHB1Q9UF11 243 aaPredicted RBP12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 KCNE5Q9UJ90 142 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 PADI1Q9ULC6 663 aa12.07□□□□□ -0.48
SQSTM1-201ENST00000360718 EXPH5Q8NEV8 1989 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 MEIOCA2RUB1 952 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 SEC14L5O43304 696 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 FGF9P31371 208 aaPredicted RBP12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 GABRA5P31644 462 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 SDC2P34741 201 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 PPP3R1P63098 170 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 MRPS15P82914 257 aaKnown RBP12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 ST3GAL3Q11203 375 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 TSPAN31Q12999 210 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 ZSWIM7Q19AV6 140 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 PAPD4Q6PIY7 484 aaKnown RBP12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 TIPARPQ7Z3E1 657 aaKnown RBP12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 CACTIN-AS1Q8N1I8 211 aa12.06□□□□□ -0.48
SQSTM1-201ENST00000360718 ZNF614Q8N883 585 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms