RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SLX4Q8IY92 1834 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 LRRC46Q96FV0 321 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 CA5BQ9Y2D0 317 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 BRWD1Q9NSI6 2320 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 A0A0U1RQK1 487 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 MBLAC1A4D2B0 266 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 FXYD1O00168 92 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 GKN2Q86XP6 184 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 OR4D6Q8NGJ1 314 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 OR10R2Q8NGX6 335 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 PLSCR3Q9NRY6 295 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 PLCXD1Q9NUJ7 323 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 TP53I11O14683 189 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC16A7O60669 478 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 HOXD9P28356 352 aaPredicted RBP18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 EMP2P54851 167 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 DHRS4L2Q6PKH6 230 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 NANOGP1Q8N7R0 232 aa18.22■□□□□ 0.51
CCDC88B-202ENST00000356786 RDH16O75452 317 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 ARL3P36405 182 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 OPRD1P41143 372 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TLE3Q04726 772 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 UBXN2BQ14CS0 331 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TECPR1Q7Z6L1 1165 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TMEM200AQ86VY9 491 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC2A12Q8TD20 617 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TMEM106AQ96A25 262 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TMEM68Q96MH6 324 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 DNTTIP1Q9H147 329 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TSPAN10Q9H1Z9 355 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 CXorf36Q9H7Y0 433 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 NUMBLQ9Y6R0 609 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 SCN7AQ01118 1682 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 N4BP2Q86UW6 1770 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 COL22A1Q8NFW1 1626 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 LDB3O75112 727 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 FURINP09958 794 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 CBR1P16152 277 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 EPHA1P21709 976 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 GPR18Q14330 331 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 DUSP7Q16829 419 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 DNAAF1Q8NEP3 725 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 OR5D14Q8NGL3 314 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 RNF141Q8WVD5 230 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TSACCQ96A04 125 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 FOXN4Q96NZ1 517 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 ELOVL3Q9HB03 270 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 NIT2Q9NQR4 276 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 MRPS17Q9Y2R5 130 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 SCO1O75880 301 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 CASRP41180 1078 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 SNRPGP62308 76 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TRA2BP62995 288 aaKnown RBP18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TNK1Q13470 666 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 COX15Q7KZN9 410 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 SGCZQ96LD1 299 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 TGM7Q96PF1 710 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 DEFB126Q9BYW3 111 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 DZANK1Q9NVP4 752 aa18.21■□□□□ 0.51
CCDC88B-202ENST00000356786 FOXE1O00358 373 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 AKR7A2O43488 359 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 IL33O95760 270 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 NME2P22392 152 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 KCNJ10P78508 379 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 CRMP1Q14194 572 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 ARHGAP19Q14CB8 494 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 ZNF542PQ5EBM4 170 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 PHF19Q5T6S3 580 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 FOXJ1Q92949 421 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 SIDT1Q9NXL6 827 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 PSMB5P28074 263 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 CX3CR1P49238 355 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC14A1Q13336 389 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 SAXO2Q658L1 398 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 KDM8Q8N371 416 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 RTP3Q9BQQ7 232 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 SLC6A14Q9UN76 642 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 TMEM72A0PK05 275 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 TRIM64A6NGJ6 449 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 TRIM64BA6NI03 449 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 K7EPK0 472 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 RAF1P04049 648 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 OR2T7P0C7T2 308 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 HTR1FP30939 366 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 ETV5P41161 510 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 PLGLB1Q02325 96 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 SEMA3BQ13214 749 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 VASH1Q7L8A9 365 aaPredicted RBP18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 PRSS45Q7RTY3 260 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 FAM71E2Q8N5Q1 922 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 OR2T27Q8NH04 317 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 OR52N1Q8NH53 320 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 MARC2Q969Z3 335 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 ARPC5LQ9BPX5 153 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 C19orf12Q9NSK7 152 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 SEMA4GQ9NTN9 838 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 SERPINE2P07093 398 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 UBE2KP61086 200 aa18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 EXOSC7Q15024 291 aaKnown RBP18.2■□□□□ 0.5
CCDC88B-202ENST00000356786 BCL2A1Q16548 175 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms