RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 MEDAGQ5VYS4 303 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 ZNF57Q68EA5 555 aaPredicted RBP12.78□□□□□ -0.36
TRIM4-201ENST00000349062 SLC38A6Q8IZM9 456 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 BCORP1Q8N888 145 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 SLC37A3Q8NCC5 494 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 OR8H1Q8NGG4 311 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 RFKQ969G6 155 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 NDC1Q9BTX1 674 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 SLC22A4Q9H015 551 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 CNOT1A5YKK6 2376 aaKnown RBP12.78□□□□□ -0.36
TRIM4-201ENST00000349062 FAM240BA0A1B0GVZ2 78 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 AHCYP23526 432 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 PYCR1P32322 319 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 CRYBB2P43320 205 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 FOXK2Q01167 660 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 PLAURQ03405 335 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 SMAD2Q15796 467 aaKnown RBP12.78□□□□□ -0.36
TRIM4-201ENST00000349062 OCLNQ16625 522 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 GJD3Q8N144 294 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 DEDD2Q8WXF8 326 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 SLC7A6Q92536 515 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 RASD2Q96D21 266 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 ZDHHC12Q96GR4 267 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 CCDC59Q9P031 241 aaKnown RBP12.78□□□□□ -0.36
TRIM4-201ENST00000349062 FXYD6P3P58550 94 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 SKP1P63208 163 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 C14orf28Q4W4Y0 310 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 TRIQKQ629K1 86 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 LINC00471Q8N535 108 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 RFLNBQ8N5W9 214 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 ASB15Q8WXK1 588 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 CCDC120Q96HB5 630 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 IL20Q9NYY1 176 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 CTSFQ9UBX1 484 aa12.78□□□□□ -0.36
TRIM4-201ENST00000349062 DIMT1Q9UNQ2 313 aaKnown RBP12.78□□□□□ -0.36
TRIM4-201ENST00000349062 HMX3A6NHT5 357 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 E9PI62 339 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 ZNF749O43361 778 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 RPP14O95059 124 aaKnown RBP12.77□□□□□ -0.36
TRIM4-201ENST00000349062 CT45A8P0DMV1 189 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 CT45A9P0DMV2 189 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 APEX1P27695 318 aaKnown RBP12.77□□□□□ -0.36
TRIM4-201ENST00000349062 PSMB10P40306 273 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 CXCL12P48061 93 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 P2RX3P56373 397 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 RHAGQ02094 409 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 GRM7Q14831 915 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 CD226Q15762 336 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 CT45A2Q5DJT8 189 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 NMNAT3Q96T66 252 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.77□□□□□ -0.36
TRIM4-201ENST00000349062 SRA1Q9HD15 236 aaKnown RBP12.77□□□□□ -0.36
TRIM4-201ENST00000349062 SEC14L4Q9UDX3 406 aa12.77□□□□□ -0.36
TRIM4-201ENST00000349062 MRPS7Q9Y2R9 242 aaKnown RBP12.77□□□□□ -0.36
TRIM4-201ENST00000349062 ELOA3DA6NLF2 546 aaPredicted RBP12.77□□□□□ -0.37
TRIM4-201ENST00000349062 SRPX2O60687 465 aaPredicted RBP12.77□□□□□ -0.37
TRIM4-201ENST00000349062 PRAMEF2O60811 474 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 MRPL28Q13084 256 aaKnown RBP12.77□□□□□ -0.37
TRIM4-201ENST00000349062 ELOA3BQ3SY89 546 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 KLHL36Q8N4N3 616 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 CLDN22Q8N7P3 220 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 ELOA3Q8NG57 546 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 OR1L3Q8NH93 324 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 KCTD7Q96MP8 289 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 ALG8Q9BVK2 526 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 GTF2A1LQ9UNN4 478 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 PIAS2O75928 621 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 S1PR1P21453 382 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 TBXA2RP21731 343 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 MAGEB1P43366 347 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 OR12D2P58182 307 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 PRTGQ2VWP7 1150 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 SLC25A45Q8N413 288 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 GRPEL2Q8TAA5 225 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 CCDC32Q9BV29 185 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 FGF21Q9NSA1 209 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 CMAHPQ9Y471 501 aa12.77□□□□□ -0.37
TRIM4-201ENST00000349062 A0A1W2PR77 199 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 TLCD2A6NGC4 264 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 MCIDASD6RGH6 385 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 E9PQ18 207 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 LMO7DNF2Z398 122 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 NOS1APO75052 506 aaPredicted RBP12.76□□□□□ -0.37
TRIM4-201ENST00000349062 HMGN1P05114 100 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 DDOSTP39656 456 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 RAB40BQ12829 278 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 IL18Q14116 193 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 DSG2Q14126 1118 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 ZNF79Q15937 498 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 IDNKQ5T6J7 187 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 NEIL3Q8TAT5 605 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 DNAJB12Q9NXW2 375 aaKnown RBP12.76□□□□□ -0.37
TRIM4-201ENST00000349062 LSM2Q9Y333 95 aaKnown RBP12.76□□□□□ -0.37
TRIM4-201ENST00000349062 KLK4Q9Y5K2 254 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 NKX2-2O95096 273 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 RCBTB2O95199 551 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 TATDN3Q17R31 274 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 MTFR2Q6P444 385 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 MARCH3Q86UD3 253 aa12.76□□□□□ -0.37
TRIM4-201ENST00000349062 KDM8Q8N371 416 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms