RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 IL20Q9NYY1 176 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 MYO15AQ9UKN7 3530 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 A0A087WUU8 490 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 TRAPPC13A5PLN9 417 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 D6RAR5 112 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ORC5O43913 435 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ICMTO60725 284 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ONECUT2O95948 504 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 IGKV1D-16P01601 117 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 IGKV3-11P04433 115 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 GP1BAP07359 652 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 MMP11P24347 488 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 SOX3P41225 446 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 MAP2K3P46734 347 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 AP2S1P53680 142 aaPredicted RBP11.79□□□□□ -0.52
CLK3-201ENST00000345005 DCAF7P61962 342 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 DCDP81605 110 aaKnown RBP11.79□□□□□ -0.52
CLK3-201ENST00000345005 HOXC5Q00444 222 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 IL11RAQ14626 422 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.79□□□□□ -0.52
CLK3-201ENST00000345005 CDONQ4KMG0 1287 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 NKAIN1Q4KMZ8 207 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ZNF730Q6ZMV8 503 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 DBX2Q6ZNG2 339 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ZER1Q7Z7L7 766 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 BCORP1Q8N888 145 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 TMEM163Q8TC26 289 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 STT3BQ8TCJ2 826 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 SLC2A12Q8TD20 617 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ZNF721Q8TF20 911 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 OIT3Q8WWZ8 545 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ACOT11Q8WXI4 607 aaPredicted RBP11.79□□□□□ -0.52
CLK3-201ENST00000345005 UFD1Q92890 307 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 DMRTB1Q96MA1 342 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 IL4I1Q96RQ9 567 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 ZNF559Q9BR84 538 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 TEX12Q9BXU0 123 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 C11orf54Q9H0W9 315 aaPredicted RBP11.79□□□□□ -0.52
CLK3-201ENST00000345005 SLC22A11Q9NSA0 550 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 TAS2R16Q9NYV7 291 aa11.79□□□□□ -0.52
CLK3-201ENST00000345005 TESQ9UGI8 421 aaKnown RBP11.79□□□□□ -0.52
CLK3-201ENST00000345005 NPIPB9F8W1W9 429 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 TFECO14948 347 aaPredicted RBP11.78□□□□□ -0.52
CLK3-201ENST00000345005 SSX4O60224 188 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 SLC43A1O75387 559 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 DDAH2O95865 285 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 ZGLP1P0C6A0 271 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 GABRA5P31644 462 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 GZMKP49863 264 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 SMSP52788 366 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 MRPL28Q13084 256 aaKnown RBP11.78□□□□□ -0.52
CLK3-201ENST00000345005 HNRNPA0Q13151 305 aaKnown RBP11.78□□□□□ -0.52
CLK3-201ENST00000345005 CMIPQ8IY22 773 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 PRSS58Q8IYP2 241 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 AGBL5Q8NDL9 886 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 PIGXQ8TBF5 258 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 ACOT12Q8WYK0 555 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 TTYH2Q9BSA4 534 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 RANGRFQ9HD47 186 aaPredicted RBP11.78□□□□□ -0.52
CLK3-201ENST00000345005 CTSFQ9UBX1 484 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 PLEKHB1Q9UF11 243 aaPredicted RBP11.78□□□□□ -0.52
CLK3-201ENST00000345005 NUFIP1Q9UHK0 495 aaKnown RBP11.78□□□□□ -0.52
CLK3-201ENST00000345005 MRTO4Q9UKD2 239 aaKnown RBP11.78□□□□□ -0.52
CLK3-201ENST00000345005 NTNG1Q9Y2I2 539 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 HEATR5AQ86XA9 2040 aa11.78□□□□□ -0.52
CLK3-201ENST00000345005 WDR87Q6ZQQ6 2873 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 TRDV1A0A1B0GX56 115 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 BET1O15155 118 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 FLRT2O43155 660 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 SLC19A2O60779 497 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 TIAF1O95411 115 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 GKN3PP0CG01 181 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 SLC2A2P11168 524 aaPredicted RBP11.77□□□□□ -0.52
CLK3-201ENST00000345005 FGF5P12034 268 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 ACP1P24666 158 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 BTG1P62324 171 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 TAGLNQ01995 201 aaKnown RBP11.77□□□□□ -0.52
CLK3-201ENST00000345005 ZFP36L1Q07352 338 aaKnown RBP11.77□□□□□ -0.52
CLK3-201ENST00000345005 FGFBP1Q14512 234 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 SF3A2Q15428 464 aaKnown RBP11.77□□□□□ -0.52
CLK3-201ENST00000345005 OR1Q1Q15612 314 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 LIPKQ5VXJ0 399 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 OVCH1Q7RTY7 1134 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 ZNF614Q8N883 585 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 ZNF321PQ8N8H1 164 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 SLC38A9Q8NBW4 561 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 RHBDD1Q8TEB9 315 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 LCORQ96JN0 433 aaPredicted RBP11.77□□□□□ -0.52
CLK3-201ENST00000345005 NUDT9Q9BW91 350 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 MMP28Q9H239 520 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 TMEM27Q9HBJ8 222 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 KRCC1Q9NPI7 259 aaPredicted RBP11.77□□□□□ -0.52
CLK3-201ENST00000345005 OCIAD1Q9NX40 245 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 PTTG3PQ9NZH4 202 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 DNAJC27Q9NZQ0 273 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 COPS7AQ9UBW8 275 aa11.77□□□□□ -0.52
CLK3-201ENST00000345005 MUC6Q6W4X9 2439 aa11.77□□□□□ -0.53
CLK3-201ENST00000345005 FRG2CA6NGY1 282 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 OR6C70A6NIJ9 312 aa11.76□□□□□ -0.53
CLK3-201ENST00000345005 OR6C76A6NM76 312 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms