RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ZNF550Q7Z398 422 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 SNX32Q86XE0 403 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 HIPK4Q8NE63 616 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 LINC01560Q8TB33 94 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 LRRC58Q96CX6 371 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 LIME1Q9H400 295 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 NANOGQ9H9S0 305 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 GP6Q9HCN6 339 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 KLHL13Q9P2N7 655 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 PROCRQ9UNN8 238 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 EMC9Q9Y3B6 208 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 HDGFL3Q9Y3E1 203 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 SPIN1Q9Y657 262 aaPredicted RBP13.71□□□□□ -0.21
VAPA-201ENST00000340541 CAPN7Q9Y6W3 813 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 ABCA4P78363 2273 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 LOC100653049A0A140TA62 436 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 ZC3H12DA2A288 527 aaKnown RBP13.7□□□□□ -0.22
VAPA-201ENST00000340541 BBIP1A8MTZ0 92 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 SULT2B1O00204 365 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 MRASO14807 208 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 CYTIPO60759 359 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 KRT34O76011 436 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 PRKD3O94806 890 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 FESP07332 822 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 TFPIP10646 304 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 FKBP2P26885 142 aaKnown RBP13.7□□□□□ -0.22
VAPA-201ENST00000340541 AQP1P29972 269 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 CD79BP40259 229 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 GYS2P54840 703 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 CTBP2P56545 445 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 HOXC5Q00444 222 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 RBBP4Q09028 425 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 MAPRE2Q15555 327 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 CYP51A1Q16850 503 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 RABL3Q5HYI8 236 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 GTF2IRD2BQ6EKJ0 949 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 WBP2NLQ6ICG8 309 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 GTF2IRD2Q86UP8 949 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 TUSC5Q8IXB3 177 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 C11orf65Q8NCR3 313 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 OR10A6Q8NH74 314 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 DNAJA3Q96EY1 480 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 REXO5Q96IC2 774 aaKnown RBP13.7□□□□□ -0.22
VAPA-201ENST00000340541 PSD2Q9BQI7 771 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 ARMC7Q9H6L4 198 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 BCO1Q9HAY6 547 aa13.7□□□□□ -0.22
VAPA-201ENST00000340541 AKAP6Q13023 2319 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 ZNF814B7Z6K7 855 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 MFN2O95140 757 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 PMS2P2O95744 297 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 NPPAP01160 153 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 IMPDH2P12268 514 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 DRD4P21917 467 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 HTR2AP28223 471 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 LSP1P33241 339 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 MAP2K6P52564 334 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 CSNK2A1P68400 391 aaPredicted RBP13.69□□□□□ -0.22
VAPA-201ENST00000340541 H3F3AP84243 136 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 DMTNQ08495 405 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 CYLC2Q14093 348 aaPredicted RBP13.69□□□□□ -0.22
VAPA-201ENST00000340541 ABLIM2Q6H8Q1 611 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 NUFIP2Q7Z417 695 aaKnown RBP13.69□□□□□ -0.22
VAPA-201ENST00000340541 SPATA21Q7Z572 469 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 MTDHQ86UE4 582 aaKnown RBP13.69□□□□□ -0.22
VAPA-201ENST00000340541 CALHM3Q86XJ0 350 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 KRT73Q86Y46 540 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 SLC43A2Q8N370 569 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 CADM2Q8N3J6 435 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 OR8J3Q8NGG0 315 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 C3orf49Q96BT1 292 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 WFDC6Q9BQY6 131 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 SPATA5L1Q9BVQ7 753 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 CACYBPQ9HB71 228 aaKnown RBP13.69□□□□□ -0.22
VAPA-201ENST00000340541 ELOVL5Q9NYP7 299 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 ANGPT4Q9Y264 503 aa13.69□□□□□ -0.22
VAPA-201ENST00000340541 ZNF716A6NP11 495 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 TMEM229AB2RXF0 380 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 DNPH1O43598 174 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 RAF1P04049 648 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 YES1P07947 543 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 PCGF2P35227 344 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 UGT2B10P36537 528 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 CRYBA2P53672 197 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 COPZ1P61923 177 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 MMEL1Q495T6 779 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 PAMR1Q6UXH9 720 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 ATG4DQ86TL0 474 aaPredicted RBP13.68□□□□□ -0.22
VAPA-201ENST00000340541 TREML1Q86YW5 311 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 POU5F2Q8N7G0 328 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 DDIT4LQ96D03 193 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 ZNF300Q96RE9 604 aaPredicted RBP13.68□□□□□ -0.22
VAPA-201ENST00000340541 ZNF607Q96SK3 696 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 ELAC2Q9BQ52 826 aaKnown RBP13.68□□□□□ -0.22
VAPA-201ENST00000340541 C12orf49Q9H741 205 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 DLL4Q9NR61 685 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 TMEM181Q9P2C4 612 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 KLHL9Q9P2J3 617 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 TRAPPC4Q9Y296 219 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 PLEKHA6Q9Y2H5 1048 aa13.68□□□□□ -0.22
VAPA-201ENST00000340541 IGKV3D-15A0A087WSY6 115 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms