RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KRT72Q14CN4 511 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 RNPS1Q15287 305 aaKnown RBP14.1□□□□□ -0.15
CLN3-201ENST00000333496 ZSWIM7Q19AV6 140 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 ZNF550Q7Z398 422 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 TUSC5Q8IXB3 177 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 FAM222BQ8WU58 562 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 SPIN1Q9Y657 262 aaPredicted RBP14.1□□□□□ -0.15
CLN3-201ENST00000333496 PRR14LQ5THK1 2151 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 LOC100653049A0A140TA62 436 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 ZC3H12DA2A288 527 aaKnown RBP14.09□□□□□ -0.15
CLN3-201ENST00000333496 CYTIPO60759 359 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 GCM2O75603 506 aaPredicted RBP14.09□□□□□ -0.15
CLN3-201ENST00000333496 KRT34O76011 436 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 PRKD3O94806 890 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 TFPIP10646 304 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 EPXP11678 715 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 FKBP2P26885 142 aaKnown RBP14.09□□□□□ -0.15
CLN3-201ENST00000333496 AQP1P29972 269 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 ADSLP30566 484 aaPredicted RBP14.09□□□□□ -0.15
CLN3-201ENST00000333496 PRKAR1BP31321 381 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 CCKARP32238 428 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 CD79BP40259 229 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 PCYT1AP49585 367 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 GZMMP51124 257 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 HOXC5Q00444 222 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 TRMT5Q32P41 509 aaKnown RBP14.09□□□□□ -0.15
CLN3-201ENST00000333496 REP15Q6BDI9 236 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 NANOGP8Q6NSW7 305 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 NUFIP2Q7Z417 695 aaKnown RBP14.09□□□□□ -0.15
CLN3-201ENST00000333496 SLC43A2Q8N370 569 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 HIPK4Q8NE63 616 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 LRRC58Q96CX6 371 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 PSD2Q9BQI7 771 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 ARMC7Q9H6L4 198 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 NANOGQ9H9S0 305 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 ARL8BQ9NVJ2 186 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 KLHL13Q9P2N7 655 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 HDGFL3Q9Y3E1 203 aa14.09□□□□□ -0.15
CLN3-201ENST00000333496 ABCA4P78363 2273 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 ZNF208O43345 1280 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 CTAG2O75638 210 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 PMS2P2O95744 297 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 FESP07332 822 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 T-ENOLP0DO92 83 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 UQCRBP14927 111 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 CLK1P49759 484 aaKnown RBP14.08□□□□□ -0.15
CLN3-201ENST00000333496 PCBP3P57721 371 aaKnown RBP14.08□□□□□ -0.15
CLN3-201ENST00000333496 CSNK2A1P68400 391 aaPredicted RBP14.08□□□□□ -0.15
CLN3-201ENST00000333496 COQ5Q5HYK3 327 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 WBP2NLQ6ICG8 309 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 DHRS4L2Q6PKH6 230 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 NET1Q7Z628 596 aaPredicted RBP14.08□□□□□ -0.15
CLN3-201ENST00000333496 SNX32Q86XE0 403 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 TREML1Q86YW5 311 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 CADM2Q8N3J6 435 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 OR10A6Q8NH74 314 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 SLC7A6OSQ96CW6 309 aaPredicted RBP14.08□□□□□ -0.15
CLN3-201ENST00000333496 WFDC6Q9BQY6 131 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 C12orf49Q9H741 205 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 BCO1Q9HAY6 547 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 CACYBPQ9HB71 228 aaKnown RBP14.08□□□□□ -0.15
CLN3-201ENST00000333496 GP6Q9HCN6 339 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 ELOVL5Q9NYP7 299 aa14.08□□□□□ -0.15
CLN3-201ENST00000333496 BBIP1A8MTZ0 92 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 ZNF814B7Z6K7 855 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 MRASO14807 208 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 MFN2O95140 757 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 IMPDH2P12268 514 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 POU2F1P14859 743 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 UGT2B10P36537 528 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 RBBP4Q09028 425 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 RASGEF1BQ0VAM2 473 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 BNIP2Q12982 314 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 DAZAP2Q15038 168 aaPredicted RBP14.08□□□□□ -0.16
CLN3-201ENST00000333496 CYP51A1Q16850 503 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 MMEL1Q495T6 779 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 TMEM201Q5SNT2 666 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 C22orf34Q6ZV56 151 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 KRT73Q86Y46 540 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 C11orf65Q8NCR3 313 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 SLC35B4Q969S0 331 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 UTP4Q969X6 686 aaKnown RBP14.08□□□□□ -0.16
CLN3-201ENST00000333496 C3orf49Q96BT1 292 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 NSL1Q96IY1 281 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 RSRC1Q96IZ7 334 aaKnown RBP14.08□□□□□ -0.16
CLN3-201ENST00000333496 ZNF300Q96RE9 604 aaPredicted RBP14.08□□□□□ -0.16
CLN3-201ENST00000333496 GPATCH1Q9BRR8 931 aaKnown RBP14.08□□□□□ -0.16
CLN3-201ENST00000333496 SPATA5L1Q9BVQ7 753 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 TMEM181Q9P2C4 612 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 ANGPT4Q9Y264 503 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 POLQO75417 2590 aa14.08□□□□□ -0.16
CLN3-201ENST00000333496 SH3D21A4FU49 640 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 A6NNC1 897 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 RAMP1O60894 148 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 YES1P07947 543 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 CALB2P22676 271 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 KCNJ5P48544 419 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 MAP2K6P52564 334 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 COPZ1P61923 177 aa14.07□□□□□ -0.16
CLN3-201ENST00000333496 H3F3AP84243 136 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms