RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 OR10Z1Q8NGY1 313 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 ZNF671Q8TAW3 534 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 PELI1Q96FA3 418 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 HHIPL1Q96JK4 782 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 DERL3Q96Q80 235 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 OR14A2Q96R54 314 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 PIPOXQ9P0Z9 390 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 RCE1Q9Y256 329 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 USP34Q70CQ2 3546 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 TBC1D3EA0A087X179 549 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 SIGLEC5O15389 551 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 NDUFA2O43678 99 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 SERPINA3P01011 423 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 LAMP2P13473 410 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 ZNF3P17036 446 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 VIPR2P41587 438 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 CCR9P51686 369 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 SIGLEC14Q08ET2 396 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 TRMT12Q53H54 448 aaKnown RBP12.4□□□□□ -0.42
SKA3-202ENST00000314759 ATRAIDQ6UW56 229 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 ST8SIA2Q92186 375 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 SMIM19Q96E16 107 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 HDAC8Q9BY41 377 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 ZNF350Q9GZX5 532 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 HRASLSQ9HDD0 168 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 USP36Q9P275 1121 aaKnown RBP12.4□□□□□ -0.42
SKA3-202ENST00000314759 KLF15Q9UIH9 416 aa12.4□□□□□ -0.42
SKA3-202ENST00000314759 CDH23Q9H251 3354 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 PLSCR5A0PG75 271 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 ARL6IP5O75915 188 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 PCDH8O95206 1070 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 TGM6O95932 706 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 UCHL1P09936 223 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 RPS4Y1P22090 263 aaKnown RBP12.39□□□□□ -0.43
SKA3-202ENST00000314759 TPMTP51580 245 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 ACTC1P68032 377 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 ACTA1P68133 377 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 CDK5R1Q15078 307 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 BAIAP2L2Q6UXY1 529 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 MTSS1LQ765P7 747 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 ZNF619Q8N2I2 560 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 CNOT9Q92600 299 aaKnown RBP12.39□□□□□ -0.43
SKA3-202ENST00000314759 FBXL2Q9UKC9 423 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 TBX21Q9UL17 535 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 MED31Q9Y3C7 131 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 HRH3Q9Y5N1 445 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 DNAJB6O75190 326 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 ZNF888P0CJ79 500 aaPredicted RBP12.39□□□□□ -0.43
SKA3-202ENST00000314759 NID1P14543 1247 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 PSMB1P20618 241 aaKnown RBP12.39□□□□□ -0.43
SKA3-202ENST00000314759 RAD52P43351 418 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 GAB4Q2WGN9 574 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 AMZ1Q400G9 498 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 UBE2NLQ5JXB2 153 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 LINGO2Q7L985 606 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 VN1R4Q7Z5H5 301 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 SLITRK4Q8IW52 837 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 SLC2A12Q8TD20 617 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 ORAI1Q96D31 301 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 ZMYND19Q96E35 227 aaPredicted RBP12.39□□□□□ -0.43
SKA3-202ENST00000314759 TNFRSF13CQ96RJ3 184 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 RAB11FIP5Q9BXF6 653 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 IFT46Q9NQC8 304 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 NPDC1Q9NQX5 325 aaPredicted RBP12.39□□□□□ -0.43
SKA3-202ENST00000314759 CREBZFQ9NS37 354 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 EMC3Q9P0I2 261 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 DEC1Q9P2X7 70 aa12.39□□□□□ -0.43
SKA3-202ENST00000314759 L7N2F9 121 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 SCAMP1O15126 338 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 MID1O15344 667 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 DBIP07108 87 aaKnown RBP12.38□□□□□ -0.43
SKA3-202ENST00000314759 DRD3P35462 400 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 SIRPAP78324 504 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 PLAURQ03405 335 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 RPE65Q16518 533 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 ZNF425Q6IV72 752 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 OVCH1Q7RTY7 1134 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 MRPL43Q8N983 215 aaKnown RBP12.38□□□□□ -0.43
SKA3-202ENST00000314759 OR51L1Q8NGJ5 315 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 RAB7BQ96AH8 199 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 PDCD1LG2Q9BQ51 273 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 NANSQ9NR45 359 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 ANKRD10Q9NXR5 420 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 CHD7Q9P2D1 2997 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 MGAT4CQ9UBM8 478 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 INSL6Q9Y581 213 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.38□□□□□ -0.43
SKA3-202ENST00000314759 A8MXK9 166 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 C1QTNF3-AMACRE9PGA6 284 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 ATP1B1P05026 303 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 CAPZA2P47755 286 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 EPHA4P54764 986 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 DCST2Q5T1A1 773 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 FAM69AQ5T7M9 428 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 FAM199XQ6PEV8 388 aaPredicted RBP12.38□□□□□ -0.43
SKA3-202ENST00000314759 FAM198BQ6UWH4 519 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 OVCH2Q7RTZ1 564 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 OR4K14Q8NGD5 310 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 OR52I2Q8NH67 350 aa12.38□□□□□ -0.43
SKA3-202ENST00000314759 GRHL3Q8TE85 626 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms