RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 FKBP2P26885 142 aaKnown RBP17.25■□□□□ 0.35
LIME1-201ENST00000309546 CLK1P49759 484 aaKnown RBP17.25■□□□□ 0.35
LIME1-201ENST00000309546 POLR2JP52435 117 aaKnown RBP17.25■□□□□ 0.35
LIME1-201ENST00000309546 ATP5J2P56134 94 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 DSTNP60981 165 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 RPS4XP62701 263 aaKnown RBP17.25■□□□□ 0.35
LIME1-201ENST00000309546 EPS8Q12929 822 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 PDK3Q15120 406 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 LIN52Q52LA3 116 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 RPS26P11Q5JNZ5 115 aaPredicted RBP17.25■□□□□ 0.35
LIME1-201ENST00000309546 ADAM5Q6NVV9 412 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 SEZ6L2Q6UXD5 910 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 ZNF836Q6ZNA1 936 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 VRK2Q86Y07 508 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 MIER2Q8N344 545 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 OR52P1PQ8NH57 321 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 LILRB1Q8NHL6 650 aaPredicted RBP17.25■□□□□ 0.35
LIME1-201ENST00000309546 VPS33AQ96AX1 596 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 MUCL1Q96DR8 90 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 AURKBQ96GD4 344 aaPredicted RBP17.25■□□□□ 0.35
LIME1-201ENST00000309546 ITCHQ96J02 903 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 TPT1P8Q9HAU6 139 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 USH1CQ9Y6N9 552 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 CIB4A0PJX0 185 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 FAM171A2A8MVW0 826 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 GPR171O14626 319 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 KLF11O14901 512 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 DNPH1O43598 174 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 CNOT4O95628 575 aaKnown RBP17.24■□□□□ 0.35
LIME1-201ENST00000309546 HEXAP06865 529 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 GKN3PP0CG01 181 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 SLC1A3P43003 542 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 MAGEA8P43361 318 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 MVDP53602 400 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 CRISP3P54108 245 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 SLC35A1P78382 337 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 MAPK11Q15759 364 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 FBXW9Q5XUX1 488 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 CASP12Q6UXS9 341 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 CACYBPQ9HB71 228 aaKnown RBP17.24■□□□□ 0.35
LIME1-201ENST00000309546 CALML5Q9NZT1 146 aa17.24■□□□□ 0.35
LIME1-201ENST00000309546 ZC3H12DA2A288 527 aaKnown RBP17.23■□□□□ 0.35
LIME1-201ENST00000309546 TMEM247A6NEH6 219 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 DPRXA6NFQ7 191 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 CCT8L1PA6NM43 557 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 ZNF208O43345 1280 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 MRPL33O75394 65 aaKnown RBP17.23■□□□□ 0.35
LIME1-201ENST00000309546 LY6G6DO95868 133 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 ZCCHC18P0CG32 403 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 IMPDH2P12268 514 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 KRTAP21-3Q3LHN1 58 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 TIMM23BQ5SRD1 257 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 MSANTD1Q6ZTZ1 278 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 ZNF440Q8IYI8 595 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 CADM2Q8N3J6 435 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 ZNF433Q8N7K0 673 aaPredicted RBP17.23■□□□□ 0.35
LIME1-201ENST00000309546 PMM1Q92871 262 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 TMEM19Q96HH6 336 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 NAA11Q9BSU3 229 aaPredicted RBP17.23■□□□□ 0.35
LIME1-201ENST00000309546 ZNF701Q9NV72 531 aaPredicted RBP17.23■□□□□ 0.35
LIME1-201ENST00000309546 TRAPPC4Q9Y296 219 aa17.23■□□□□ 0.35
LIME1-201ENST00000309546 ZNF443Q9Y2A4 671 aaPredicted RBP17.23■□□□□ 0.35
LIME1-201ENST00000309546 DSPPQ9NZW4 1301 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 A0A1W2PP18 115 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 FAM234BA2RU67 622 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 CDHR4A6H8M9 788 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 FAAHO00519 579 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 TMCC2O75069 709 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 SOD3P08294 240 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 PAX1P15863 534 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 SLC16A1P53985 500 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 STX1BP61266 288 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 FAPQ12884 760 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 ZNF672Q499Z4 452 aaPredicted RBP17.22■□□□□ 0.35
LIME1-201ENST00000309546 SLC2A7Q6PXP3 512 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 OR52N5Q8NH56 324 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 SMAP2Q8WU79 429 aaPredicted RBP17.22■□□□□ 0.35
LIME1-201ENST00000309546 SLC38A5Q8WUX1 472 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 GTPBP3Q969Y2 492 aaKnown RBP17.22■□□□□ 0.35
LIME1-201ENST00000309546 ASB6Q9NWX5 421 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 NPAP1Q9NZP6 1156 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 MAGED1Q9Y5V3 778 aaPredicted RBP17.22■□□□□ 0.35
LIME1-201ENST00000309546 CADP27708 2225 aa17.22■□□□□ 0.35
LIME1-201ENST00000309546 A0A1W2PR80 420 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 OR5H1A6NKK0 313 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 EIF1BO60739 113 aaKnown RBP17.21■□□□□ 0.35
LIME1-201ENST00000309546 TFPTP0C1Z6 253 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 CXCR1P25024 350 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 NTF4P34130 210 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 IDUAP35475 653 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 CDKN1AP38936 164 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 COPZ1P61923 177 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 LARS2Q15031 903 aaKnown RBP17.21■□□□□ 0.35
LIME1-201ENST00000309546 AGBL2Q5U5Z8 902 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 EPGNQ6UW88 154 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 OR52E4Q8NGH9 312 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 SLC9A8Q9Y2E8 581 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 FLVCR1Q9Y5Y0 555 aa17.21■□□□□ 0.35
LIME1-201ENST00000309546 NAV3Q8IVL0 2385 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 ABCD4O14678 606 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms