RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ZIC2O95409 532 aaPredicted RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 CLTBP09497 229 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 SAGP10523 405 aaPredicted RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 HMGA1P17096 107 aaKnown RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 MAKP20794 623 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 BDKRB2P30411 391 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 GRPRP30550 384 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 ANXA11P50995 505 aaKnown RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 DLX5P56178 289 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 RGS8P57771 180 aaPredicted RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 GUCA2AQ02747 115 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 KCNAB1Q14722 419 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 TMEM69Q5SWH9 247 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 C10orf90Q96M02 699 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 MCHR1Q99705 422 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 GAL3ST1Q99999 423 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 EFCAB11Q9BUY7 163 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 GPN1Q9HCN4 374 aaPredicted RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 PRUNE2Q8WUY3 3088 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 TCF20Q9UGU0 1960 aaKnown RBP12.44□□□□□ -0.42
SKA3-201ENST00000298260 CARNS1A5YM72 827 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 CCSO14618 274 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 IMPA2O14732 288 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 GKN3PP0CG01 181 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 CNR1P21554 472 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 BSGP35613 385 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 RFC3P40938 356 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 PRRT3Q5FWE3 981 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 UBE2NLQ5JXB2 153 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 DMKNQ6E0U4 476 aaPredicted RBP12.44□□□□□ -0.42
SKA3-201ENST00000298260 TMEM71Q6P5X7 295 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 WDR88Q6ZMY6 472 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 OR2W3Q7Z3T1 314 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 ZNF546Q86UE3 836 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 TET1Q8NFU7 2136 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 THAP6Q8TBB0 222 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 LINC01599Q8WXQ3 324 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 SEC22AQ96IW7 307 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 ZNF471Q9BX82 626 aaPredicted RBP12.44□□□□□ -0.42
SKA3-201ENST00000298260 ZCCHC2Q9C0B9 1178 aaKnown RBP12.44□□□□□ -0.42
SKA3-201ENST00000298260 NEUROD4Q9HD90 331 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 PCOLCE2Q9UKZ9 415 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 TRAV14DV4A0A0A6YYC5 116 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 HMSDA8MTL9 139 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 H7BY64 318 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 PIN1P1O15428 100 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 NDUFB6O95139 128 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 GALP22466 123 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 IFNGR2P38484 337 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 AKR1C3P42330 323 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 RPS11P62280 158 aaKnown RBP eCLIP12.44□□□□□ -0.42
SKA3-201ENST00000298260 ST3GAL3Q11203 375 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 CRMP1Q14194 572 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 MAPK14Q16539 360 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 C4orf46Q504U0 113 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 MRM1Q6IN84 353 aaKnown RBP12.44□□□□□ -0.42
SKA3-201ENST00000298260 TSSK4Q6SA08 328 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 UNQ6126/PRO20091Q6UXV3 157 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 ETV3LQ6ZN32 361 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 OR13C2Q8NGS9 318 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 PAWRQ96IZ0 340 aaKnown RBP12.44□□□□□ -0.42
SKA3-201ENST00000298260 PRAP1Q96NZ9 151 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 MICU1Q9BPX6 476 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.44□□□□□ -0.42
SKA3-201ENST00000298260 KCNK15Q9H427 330 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 C6orf106Q9H6K1 298 aaPredicted RBP12.44□□□□□ -0.42
SKA3-201ENST00000298260 RASL12Q9NYN1 266 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 ABRACLQ9P1F3 81 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 KCNK7Q9Y2U2 307 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 MYO7AQ13402 2215 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 DENND4CQ5VZ89 1909 aa12.44□□□□□ -0.42
SKA3-201ENST00000298260 SLC5A10A0PJK1 596 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ANKRD20A5PA0PJZ0 165 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 MEX3AA1L020 520 aaKnown RBP12.43□□□□□ -0.42
SKA3-201ENST00000298260 GABARAPH6UMI1 98 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ASGR2P07307 311 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 GP1BAP07359 652 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 SBK2P0C263 348 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 H2AFB1P0C5Y9 115 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 NT5EP21589 574 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 FPR3P25089 353 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 PRMT2P55345 433 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 S100A12P80511 92 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 BDH1Q02338 343 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TMEM115Q12893 351 aaPredicted RBP12.43□□□□□ -0.42
SKA3-201ENST00000298260 GLYATL2Q8WU03 294 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 C3orf49Q96BT1 292 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TCEAL4Q96EI5 215 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 SLC41A3Q96GZ6 507 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 AMDHD1Q96NU7 426 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 LYSMD1Q96S90 227 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 FN3KQ9H479 309 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ADGRL4Q9HBW9 690 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 TAC3Q9UHF0 121 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ST6GALNAC2Q9UJ37 374 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 FBXO4Q9UKT5 387 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ASF1AQ9Y294 204 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 UBE2QL1A1L167 161 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 ICOSLGO75144 302 aa12.43□□□□□ -0.42
SKA3-201ENST00000298260 RBM39Q14498 530 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms