RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ELOA3BQ3SY89 546 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 ALG10BQ5I7T1 473 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 PDSS1Q5T2R2 415 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 RIPPLY2Q5TAB7 128 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 MTFR2Q6P444 385 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 ULK3Q6PHR2 472 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 CYP2R1Q6VVX0 501 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 TMPPEQ6ZT21 453 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 FKBP9P1Q75LS8 142 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 P4HA3Q7Z4N8 544 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 TSEN54Q7Z6J9 526 aaKnown RBP11.43□□□□□ -0.58
SS18-202ENST00000269138 MRGPRGQ86SM5 289 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 LIX1LQ8IVB5 337 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 ELOA3Q8NG57 546 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 MBD3L2Q8NHZ7 208 aaPredicted RBP11.43□□□□□ -0.58
SS18-202ENST00000269138 ADAMTS16Q8TE57 1224 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 SSC4DQ8WTU2 575 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 DNAJA4Q8WW22 397 aaPredicted RBP11.43□□□□□ -0.58
SS18-202ENST00000269138 SLC38A4Q969I6 547 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 AMBRA1Q9C0C7 1298 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 RPS6KA6Q9UK32 745 aa11.43□□□□□ -0.58
SS18-202ENST00000269138 SPIN1Q9Y657 262 aaPredicted RBP11.43□□□□□ -0.58
SS18-202ENST00000269138 IGHV3-15A0A0B4J1V0 119 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 SULT2B1O00204 365 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 IMPDH2P12268 514 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 FUT4P22083 530 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 ENPP1P22413 925 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 AGFG1P52594 562 aaKnown RBP11.42□□□□□ -0.58
SS18-202ENST00000269138 OR2B6P58173 313 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 EGR4Q05215 589 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 FOXF2Q12947 444 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 FOXD4Q12950 439 aaPredicted RBP11.42□□□□□ -0.58
SS18-202ENST00000269138 PIN1Q13526 163 aaPredicted RBP11.42□□□□□ -0.58
SS18-202ENST00000269138 ZNF239Q16600 458 aaKnown RBP11.42□□□□□ -0.58
SS18-202ENST00000269138 DNAL1Q4LDG9 190 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 IFI44LQ53G44 452 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 PGM2L1Q6PCE3 622 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 ZNF613Q6PF04 617 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 WDR88Q6ZMY6 472 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 GCNT2Q8N0V5 402 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 SDCCAG3Q96C92 435 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 CCDC124Q96CT7 223 aaKnown RBP11.42□□□□□ -0.58
SS18-202ENST00000269138 DDIT4LQ96D03 193 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 SLC47A1Q96FL8 570 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 NSMCE2Q96MF7 247 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 CADM1Q9BY67 442 aaKnown RBP11.42□□□□□ -0.58
SS18-202ENST00000269138 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.42□□□□□ -0.58
SS18-202ENST00000269138 HDGFL3Q9Y3E1 203 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 ZNF175Q9Y473 711 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 PCNX1Q96RV3 2341 aa11.42□□□□□ -0.58
SS18-202ENST00000269138 A0A087WUJ7 227 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 TRAPPC13A5PLN9 417 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 A8MVM7 634 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 J3KTA2 159 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 GSC2O15499 205 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 NPIPB7O75200 414 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 DNAJC8O75937 253 aaPredicted RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 RCBTB2O95199 551 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 SYNGR4O95473 234 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 IL2RAP01589 272 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 FKBP2P26885 142 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 CLK1P49759 484 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 MAP2K6P52564 334 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 SMSP52788 366 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 RAC3P60763 192 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 TRIM25Q14258 630 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 C1orf140Q5VVS0 124 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 GDF7Q7Z4P5 450 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 GEMIN6Q8WXD5 167 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 INTS12Q96CB8 462 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 KTI12Q96EK9 354 aaPredicted RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 SLC41A3Q96GZ6 507 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 TM9SF2Q99805 663 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 POTEKPQ9BYX7 375 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 PRRG4Q9BZD6 226 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 C12orf10Q9HB07 376 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 TIGARQ9NQ88 270 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 PAQR5Q9NXK6 330 aaPredicted RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 SELENONQ9NZV5 590 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 ACTR3BQ9P1U1 418 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 RIMS3Q9UJD0 308 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 MCTS1Q9ULC4 181 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 SLC7A7Q9UM01 511 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 CLEC4AQ9UMR7 237 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 A4GNTQ9UNA3 340 aa11.41□□□□□ -0.58
SS18-202ENST00000269138 SAMD4AQ9UPU9 718 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 PHF3Q92576 2039 aaKnown RBP11.41□□□□□ -0.58
SS18-202ENST00000269138 ZNF814B7Z6K7 855 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 ACOT8O14734 319 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 FFAR1O14842 300 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 CHP2O43745 196 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 ATP5HO75947 161 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 PMS2P2O95744 297 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 IFNW1P05000 195 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 TMIGD3P0DMS9 266 aaPredicted RBP11.4□□□□□ -0.58
SS18-202ENST00000269138 PNMTP11086 282 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 FPR1P21462 350 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 TAS2R41P59536 307 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 LINC00114Q6XXX2 140 aa11.4□□□□□ -0.58
SS18-202ENST00000269138 DHFR2Q86XF0 187 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms