RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 C3orf33Q6P1S2 294 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 COMMD6Q7Z4G1 85 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 MISPQ8IVT2 679 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 SLC44A3Q8N4M1 653 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 CLP1Q92989 425 aaKnown RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 PARP12Q9H0J9 701 aaKnown RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 TMPRSS5Q9H3S3 457 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 POLE3Q9NRF9 147 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 TMEM72A0PK05 275 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 OR5H14A6NHG9 310 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 CACNB4O00305 520 aaPredicted RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 OR2A4O95047 310 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 RHOP08100 348 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 ZNF8P17098 575 aaPredicted RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 MPGP29372 298 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 AGTR1P30556 359 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 PSMB10P40306 273 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 RPS10P46783 165 aaKnown RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 CEBPGP53567 150 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 NDUFA9Q16795 377 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 ZXDCQ2QGD7 858 aaPredicted RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 FNDC3BQ53EP0 1204 aaKnown RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 STEAP2Q8NFT2 490 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 OR10D4PQ8NGN7 298 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 OR2A7Q96R45 310 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 EDEM2Q9BV94 578 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 SUV39H2Q9H5I1 410 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 CXorf36Q9H7Y0 433 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 IL21RQ9HBE5 538 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 IL26Q9NPH9 171 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 UQCC1Q9NVA1 299 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 FARSAQ9Y285 508 aaKnown RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 DMRT1Q9Y5R6 373 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 A0A087X0M5 115 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 A0A0D9SG52 128 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 A0A1B0GV50 99 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 A0A1B0GX30 115 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 A0A1W2PPH5 198 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 SNAI1O95863 264 aaPredicted RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 ARG1P05089 322 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 ADH1AP07327 375 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 GSTM3P21266 225 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 TACR2P21452 398 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 RBM34P42696 430 aaKnown RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 ACTR1AP61163 376 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 PRPF38BQ5VTL8 546 aaKnown RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 RNF219Q5W0B1 726 aaPredicted RBP13.59□□□□□ -0.23
PTPRA-201ENST00000216877 ALKAL1Q6UXT8 129 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 PPTC7Q8NI37 304 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 PIGXQ8TBF5 258 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 PDCD1LG2Q9BQ51 273 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 SLC6A16Q9GZN6 736 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 TREM2Q9NZC2 230 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 PPP4R1LQ9P1A2 415 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 FBXO4Q9UKT5 387 aa13.59□□□□□ -0.23
PTPRA-201ENST00000216877 A0A087WUU8 490 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 C5orf51A6NDU8 294 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 NAP1L6A6NFF2 107 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 GPR37L1O60883 481 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 HEXBP07686 556 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 GKN3PP0CG01 181 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 ABOP16442 354 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 NME2P22392 152 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 CALCRP30988 508 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 RSU1Q15404 277 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 RNLSQ5VYX0 342 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 OR10K2Q6IF99 312 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 MOB3CQ70IA8 216 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 NXPE1Q8N323 547 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 CPXM2Q8N436 756 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 ZNF615Q8N8J6 731 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 SLC25A36Q96CQ1 311 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 ZNF354BQ96LW1 612 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 BRD9Q9H8M2 597 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 ACKR4Q9NPB9 350 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 FAM86C1Q9NVL1 165 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 SLC31A2O15432 143 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 MBP02144 154 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 H2AFB1P0C5Y9 115 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 ILF3Q12906 894 aaKnown RBP eCLIP13.58□□□□□ -0.243e-10■■■□□ 15.1
PTPRA-201ENST00000216877 NKAPLQ5M9Q1 402 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 EXOSC6Q5RKV6 272 aaKnown RBP13.58□□□□□ -0.24
PTPRA-201ENST00000216877 KHDRBS2Q5VWX1 349 aaKnown RBP13.58□□□□□ -0.24
PTPRA-201ENST00000216877 C6orf120Q7Z4R8 191 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 SKA3Q8IX90 412 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 NRMQ8IXM6 262 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 CD300LFQ8TDQ1 290 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 ATG101Q9BSB4 218 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 LAT2Q9GZY6 243 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 TSPAN10Q9H1Z9 355 aaPredicted RBP13.58□□□□□ -0.24
PTPRA-201ENST00000216877 TMEM38AQ9H6F2 299 aa13.58□□□□□ -0.24
PTPRA-201ENST00000216877 PHYHO14832 338 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 SOX15O60248 233 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 SNAPC5O75971 98 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 CPN1P15169 458 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 ITGA3P26006 1051 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 OMPP47874 163 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 PRKXP51817 358 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 ST8SIA6P61647 398 aa13.57□□□□□ -0.24
PTPRA-201ENST00000216877 CDK5Q00535 292 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms