RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TFP02787 698 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CBR1P16152 277 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TAL1P17542 331 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 IMPDH1P20839 514 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ECI1P42126 302 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CCL11P51671 97 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 BMXP51813 675 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HK3P52790 923 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 AKR1C2P52895 323 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TAS2R30P59541 319 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 INCA1Q0VD86 236 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HNF4GQ14541 408 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PRAMEF20Q5VT98 475 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR7E24Q6IFN5 339 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FAM58AQ8N1B3 248 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SLC43A3Q8NBI5 491 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RGMAQ96B86 450 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SCRN2Q96FV2 425 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SCLYQ96I15 445 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ATG101Q9BSB4 218 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CRISPLD2Q9H0B8 497 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TPT1P8Q9HAU6 139 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SIRT7Q9NRC8 400 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FNIP2Q9P278 1114 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 B3GALT5Q9Y2C3 310 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TRAV20A0A0B4J274 112 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FFAR3O14843 346 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GPR42O15529 346 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR2T1O43869 369 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SOCS5O75159 536 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RFPL3O75679 317 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LYZL6O75951 148 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PTAFRP25105 342 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GIFP27352 417 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PKLRP30613 574 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CX3CR1P49238 355 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SLC11A1P49279 550 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HNRNPA3P51991 378 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TAS2R46P59540 309 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RUNX3Q13761 415 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CLINT1Q14677 625 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PPP1R3AQ16821 1122 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RTL8BQ17RB0 113 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 IGSF11Q5DX21 431 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RPL7L1Q6DKI1 246 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR10K2Q6IF99 312 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ADIPOR2Q86V24 386 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 JAGN1Q8N5M9 183 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NETO1Q8TDF5 533 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RAB1CQ92928 201 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CDK15Q96Q40 435 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ITPAQ9BY32 194 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OPN3Q9H1Y3 402 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM134Q9H6X4 195 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SEMA4BQ9NPR2 832 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FKBPLQ9UIM3 349 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF816-ZNF321PA0A0X1KG74 233 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FAM237AA0A1B0GTK4 181 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 WNT10BO00744 389 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 UBE2L6O14933 153 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TIMM8AO60220 97 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TOXO94900 526 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NUDT3O95989 172 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 F2P00734 622 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 JCHAINP01591 159 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SHBGP04278 402 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TPOP07202 933 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PRSS56P0CW18 603 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ELNP15502 786 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CRABP1P29762 137 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GABRB2P47870 512 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SCNN1GP51170 649 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SLC35A2P78381 396 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CTBP1Q13363 440 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 UPP1Q16831 310 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PHYHD1Q5SRE7 291 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FAM162BQ5T6X4 162 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF783Q6ZMS7 281 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 Q6ZTK2 550 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZSWIM9Q86XI8 627 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR6Q1Q8NGQ2 317 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR1E3Q8WZA6 343 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 C10orf90Q96M02 699 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 C1orf43Q9BWL3 253 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ULBP3Q9BZM4 244 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR52A5Q9H2C5 316 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TP63Q9H3D4 680 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZMAT4Q9H898 229 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LMAN1LQ9HAT1 526 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 P2RX2Q9UBL9 471 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CPDO75976 1380 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NID2Q14112 1375 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TNS3Q68CZ2 1445 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LOC102724200A0A096LPH7 203 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TRABD2BA6NFA1 517 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 DLL1O00548 723 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ADAM12O43184 909 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 KLK10O43240 276 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LYPLA1O75608 230 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HOXD4P09016 255 aaPredicted RBP2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms