RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 LHX3Q9UBR4 397 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 GXYLT2A0PJZ3 443 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 VGLL3A8MV65 326 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FAM72CH0Y354 149 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 VAMP5O95183 116 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FAM87AP0C7U9 286 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF44P15621 663 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 HTR2BP41595 481 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 PITX1P78337 314 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 GLO1Q04760 184 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 PMPCAQ10713 525 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 COL9A2Q14055 689 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FAM72AQ5TYM5 149 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FAM72DQ6L9T8 149 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SLC18B1Q6NT16 456 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF813Q6ZN06 617 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SLC16A9Q7RTY1 509 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SPRED1Q7Z699 444 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FAM72BQ86X60 149 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 RBM15BQ8NDT2 890 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 OR10A6Q8NH74 314 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SHANK3Q9BYB0 1731 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 LANCL2Q9NS86 450 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 C5AR2Q9P296 337 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 IGHV1OR21-1A0A087WYE8 117 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 PRAMEF33A0A0G2JMD5 474 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SIAH2O43255 324 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 PRAMEF10O60809 474 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 HPP00738 406 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 NELFEP18615 380 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 TBXA2RP21731 343 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 NR4A2P43354 598 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 YAP1P46937 504 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FADDQ13158 208 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 E2F2Q14209 437 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 RNPS1Q15287 305 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 ANKRD34AQ69YU3 496 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 MEX3DQ86XN8 651 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 TCTE3Q8IZS6 198 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 RDH10Q8IZV5 341 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 RNF148Q8N7C7 305 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FRMD1Q8N878 549 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 CHPT1Q8WUD6 406 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 FAM46AQ96IP4 442 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 LRR1Q96L50 414 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 C1QTNF6Q9BXI9 259 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SLC5A7Q9GZV3 580 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 TOR3AQ9H497 397 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 DNAJB12Q9NXW2 375 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 GRHL1Q9NZI5 618 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 TESMINQ9Y4I5 508 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 GPR179Q6PRD1 2367 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 YES1P07947 543 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 GTF2F2P13984 249 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 CPT2P23786 658 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 ARR3P36575 388 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 CTSCP53634 463 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 MRPS10P82664 201 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 RGS7BPQ6MZT1 257 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SSX6Q7RTT6 188 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SLC36A1Q7Z2H8 476 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 CCL19Q99731 98 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 GABRG3Q99928 467 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 DDA1Q9BW61 102 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 C1orf198Q9H425 327 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SRA1Q9HD15 236 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 RHBDL2Q9NX52 303 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 ZMAT5Q9UDW3 170 aaKnown RBP4.67□□□□□ -1.66
SCN1A-218ENST00000640036 SLC2A6Q9UGQ3 507 aa4.67□□□□□ -1.66
SCN1A-218ENST00000640036 TMEM225BP0DP42 221 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 GGT1P19440 569 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ADH6P28332 368 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SLC9A3P48764 834 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RGS19P49795 217 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 IDH3GP51553 393 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SNU13P55769 128 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CLDN17P56750 224 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 COL28A1Q2UY09 1125 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 LYRM7Q5U5X0 104 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 WDR74Q6RFH5 385 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 OVCH1Q7RTY7 1134 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RNF130Q86XS8 419 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 EIF1ADQ8N9N8 165 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RHEBL1Q8TAI7 183 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF417Q8TAU3 575 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TMBIM1Q969X1 311 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 C11orf24Q96F05 449 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF582Q96NG8 517 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF587Q96SQ5 575 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SHARPINQ9H0F6 387 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 NARFLQ9H6Q4 476 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 OR14J1Q9UGF5 321 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SCP2D1Q9UJQ7 156 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 A0A087WZY1 265 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 EME2A4GXA9 379 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ANTXRLA6NF34 631 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TRAPPC2LH3BP13 241 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 M0QX08 132 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PHYHO14832 338 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CRTAPO75718 401 aaPredicted RBP4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms