RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 DDIT4LQ96D03 193 aa15.9■□□□□ 0.14
PNKP-225ENST00000636214 TEX37Q96LM6 180 aa15.9■□□□□ 0.14
PNKP-225ENST00000636214 ZNF300Q96RE9 604 aaPredicted RBP15.9■□□□□ 0.14
PNKP-225ENST00000636214 CCDC106Q9BWC9 280 aa15.9■□□□□ 0.14
PNKP-225ENST00000636214 RMND5AQ9H871 391 aa15.9■□□□□ 0.14
PNKP-225ENST00000636214 NOSIPQ9Y314 301 aaKnown RBP15.9■□□□□ 0.14
PNKP-225ENST00000636214 H7C1Q1 480 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 SMAD7O15105 426 aaKnown RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 DNPH1O43598 174 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 SNNO75324 88 aaPredicted RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 SLC22A3O75751 556 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 LYZL6O75951 148 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 CNOT4O95628 575 aaKnown RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 PMS2P2O95744 297 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 PLAUP00749 431 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 GSNP06396 782 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 CCNA2P20248 432 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 IDH2P48735 452 aaKnown RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 WDR4P57081 412 aaKnown RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 OR2B6P58173 313 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 RPS4XP62701 263 aaKnown RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 PDCD4Q53EL6 469 aaKnown RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 DNAJC14Q6Y2X3 702 aaPredicted RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 ANKFN1Q8N957 763 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 PNPT1Q8TCS8 783 aaKnown RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 PMM1Q92871 262 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 FBXW5Q969U6 566 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 TMEM204Q9BSN7 226 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 INPP5KQ9BT40 448 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 MANSC1Q9H8J5 431 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 MTHFD2LQ9H903 347 aaPredicted RBP15.89■□□□□ 0.13
PNKP-225ENST00000636214 CALML5Q9NZT1 146 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 P2RX2Q9UBL9 471 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 PRSS50Q9UI38 385 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 GPR45Q9Y5Y3 372 aa15.89■□□□□ 0.13
PNKP-225ENST00000636214 AGAP5A6NIR3 686 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 CLDN24A6NM45 220 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 ZNF814B7Z6K7 855 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 DBIP07108 87 aaKnown RBP15.88■□□□□ 0.13
PNKP-225ENST00000636214 GGT1P19440 569 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 IL12AP29459 219 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 CDKN2CP42773 168 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 MAGEA8P43361 318 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 POLR2HP52434 150 aaKnown RBP15.88■□□□□ 0.13
PNKP-225ENST00000636214 SLC18A1P54219 525 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 ATP5J2P56134 94 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 LTBQ06643 244 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 PDK3Q15120 406 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 PPA1Q15181 289 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 GSTA3Q16772 222 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 NCMAPQ5T1S8 102 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 ABLIM2Q6H8Q1 611 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 Q71RC1 249 aaPredicted RBP15.88■□□□□ 0.13
PNKP-225ENST00000636214 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.88■□□□□ 0.13
PNKP-225ENST00000636214 ZNF440Q8IYI8 595 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 GTPBP3Q969Y2 492 aaKnown RBP15.88■□□□□ 0.13
PNKP-225ENST00000636214 APH1AQ96BI3 265 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 ZG16BQ96DA0 208 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 DNAJA3Q96EY1 480 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 COX4I2Q96KJ9 171 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 SMR3AQ99954 134 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 NAA11Q9BSU3 229 aaPredicted RBP15.88■□□□□ 0.13
PNKP-225ENST00000636214 LAMP3Q9UQV4 416 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 CSPG4Q6UVK1 2322 aa15.88■□□□□ 0.13
PNKP-225ENST00000636214 NSD1Q96L73 2696 aaPredicted RBP15.87■□□□□ 0.13
PNKP-225ENST00000636214 TMED7-TICAM2A0A0A6YYA0 188 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 A0A1W2PP18 115 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 CIB4A0PJX0 185 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 CFAP73A6NFT4 308 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 CCT8L1PA6NM43 557 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 UBDO15205 165 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 BCAS1O75363 584 aaPredicted RBP15.87■□□□□ 0.13
PNKP-225ENST00000636214 MRPL33O75394 65 aaKnown RBP15.87■□□□□ 0.13
PNKP-225ENST00000636214 CHRM4P08173 479 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 CRATP43155 626 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 CRISP3P54108 245 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 AP1ARQ63HQ0 302 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 CNOT9Q92600 299 aaKnown RBP15.87■□□□□ 0.13
PNKP-225ENST00000636214 TRMT61AQ96FX7 289 aaKnown RBP15.87■□□□□ 0.13
PNKP-225ENST00000636214 SLC38A1Q9H2H9 487 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 ARMC7Q9H6L4 198 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 ZIM2Q9NZV7 527 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 TMEM181Q9P2C4 612 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 ING1Q9UK53 422 aaPredicted RBP15.87■□□□□ 0.13
PNKP-225ENST00000636214 TMED7Q9Y3B3 224 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 HIVEP2P31629 2446 aa15.87■□□□□ 0.13
PNKP-225ENST00000636214 IGKV3D-15A0A087WSY6 115 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 PRAMEF27A3QJZ7 478 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 ZNF208O43345 1280 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 EIF1BO60739 113 aaKnown RBP15.86■□□□□ 0.13
PNKP-225ENST00000636214 HEXAP06865 529 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 SLC1A3P43003 542 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 MAP2K6P52564 334 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 COPZ1P61923 177 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 SLC35A1P78382 337 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 BSPH1Q075Z2 132 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 LIN52Q52LA3 116 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 COX20Q5RI15 118 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 TIMM23BQ5SRD1 257 aa15.86■□□□□ 0.13
PNKP-225ENST00000636214 C6orf10Q5SRN2 563 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms