RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PGLYRP3Q96LB9 341 aa10.03□□□□□ -0.8
UPF3A-212ENST00000619079 TIMP4Q99727 224 aa10.03□□□□□ -0.8
UPF3A-212ENST00000619079 MRI1Q9BV20 369 aa10.03□□□□□ -0.8
UPF3A-212ENST00000619079 BARX1Q9HBU1 254 aaPredicted RBP10.03□□□□□ -0.8
UPF3A-212ENST00000619079 ACSS1Q9NUB1 689 aaPredicted RBP10.03□□□□□ -0.8
UPF3A-212ENST00000619079 TAS2R10Q9NYW0 307 aa10.03□□□□□ -0.8
UPF3A-212ENST00000619079 MRPL15Q9P015 296 aaKnown RBP10.03□□□□□ -0.8
UPF3A-212ENST00000619079 MYEF2Q9P2K5 600 aaKnown RBP10.03□□□□□ -0.8
UPF3A-212ENST00000619079 ERVK-19Q9WJR5 959 aa10.03□□□□□ -0.8
UPF3A-212ENST00000619079 HELZP42694 1942 aaKnown RBP10.03□□□□□ -0.8
UPF3A-212ENST00000619079 PLXNB3Q9ULL4 1909 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 SLC22A31A6NKX4 558 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 LINC00587B1AMM8 73 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 SSX5O60225 188 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 LTBRP36941 435 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 FRKP42685 505 aaPredicted RBP10.02□□□□□ -0.81
UPF3A-212ENST00000619079 GCGRP47871 477 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 LINC00303Q3SY05 128 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 TMEM255AQ5JRV8 349 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 IER5LQ5T953 404 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PRAMEF8Q5VWM4 474 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PRAMEF7Q5VXH5 474 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 DHRS7BQ6IAN0 325 aaPredicted RBP10.02□□□□□ -0.81
UPF3A-212ENST00000619079 MTFR2Q6P444 385 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ESPNLQ6ZVH7 1005 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 MEX3DQ86XN8 651 aaKnown RBP10.02□□□□□ -0.81
UPF3A-212ENST00000619079 CMTM4Q8IZR5 234 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 TMEM99Q8N816 258 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 GLYATL2Q8WU03 294 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 SIRT3Q9NTG7 399 aaPredicted RBP10.02□□□□□ -0.81
UPF3A-212ENST00000619079 HCFC1R1Q9NWW0 138 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 TRPC4Q9UBN4 977 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 CD207Q9UJ71 328 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PPIL1Q9Y3C6 166 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ACOT7O00154 380 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 COCHO43405 550 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 GATCO43716 136 aaKnown RBP10.02□□□□□ -0.81
UPF3A-212ENST00000619079 GP1BAP07359 652 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ZNF35P13682 527 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 MST1P26927 711 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 GKP32189 559 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 MNDAP41218 407 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 SPINT3P49223 89 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 H2BFSP57053 126 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PCBP4P57723 403 aaKnown RBP10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ACTC1P68032 377 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ACTA1P68133 377 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 MLC1Q15049 377 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 AVPI1Q5T686 147 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ELP2Q6IA86 826 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PLBD1Q6P4A8 553 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ZNF613Q6PF04 617 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 OR5D16Q8NGK9 328 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 GANCQ8TET4 914 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PHYHIPQ92561 330 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 DIO2Q92813 273 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 GHSRQ92847 366 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 TBX5Q99593 518 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 FAM83CQ9BQN1 747 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PITHD1Q9GZP4 211 aaPredicted RBP10.02□□□□□ -0.81
UPF3A-212ENST00000619079 TDP1Q9NUW8 608 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 PCDHGA5Q9Y5G8 931 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 ATG2AQ2TAZ0 1938 aa10.02□□□□□ -0.81
UPF3A-212ENST00000619079 VCANP13611 3396 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 RFPL4AA6NLU0 287 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 RFPL4AL1F8VTS6 287 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 KLF4O43474 513 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 SGCEO43556 437 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 B4GALT2O60909 372 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 EPPINO95925 133 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 RHOP08100 348 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 NPPBP16860 134 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 TBXA2RP21731 343 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 NTHL1P78549 312 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 STX4Q12846 297 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 RBMS2Q15434 407 aaKnown RBP10.01□□□□□ -0.81
UPF3A-212ENST00000619079 CCSMST1Q4G0I0 132 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 SKA3Q8IX90 412 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 IZUMO1Q8IYV9 350 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 MMP21Q8N119 569 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 RELL2Q8NC24 303 aaPredicted RBP10.01□□□□□ -0.81
UPF3A-212ENST00000619079 SMRP1Q8NCR6 262 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 C17orf47Q8NEP4 570 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 DMBX1Q8NFW5 382 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 OR2AK2Q8NG84 335 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 OR5M1Q8NGP8 315 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 ELP5Q8TE02 316 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 ZNF707Q96C28 371 aaPredicted RBP10.01□□□□□ -0.81
UPF3A-212ENST00000619079 ALG14Q96F25 216 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 C4orf36Q96KX1 117 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 ZCCHC2Q9C0B9 1178 aaKnown RBP10.01□□□□□ -0.81
UPF3A-212ENST00000619079 SPHK1Q9NYA1 384 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 A0A0B4J203 849 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 TRAV20A0A0B4J274 112 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 TMEM82A0PJX8 343 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 TMEM218A2RU14 115 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 PRAMEF27A3QJZ7 478 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 ZNF879B4DU55 563 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 E9PI62 339 aa10.01□□□□□ -0.81
UPF3A-212ENST00000619079 NPC1O15118 1278 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms