RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 FOXD4Q12950 439 aaPredicted RBP13.28□□□□□ -0.28
CD48-203ENST00000613788 GK3PQ14409 553 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 ATP6AP1Q15904 470 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 NHSL2Q5HYW2 709 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 C5orf46Q6UWT4 87 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 RRM2BQ7LG56 351 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 NKAIN4Q8IVV8 208 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 LILRA2Q8N149 483 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 ABTB1Q969K4 478 aaPredicted RBP13.28□□□□□ -0.28
CD48-203ENST00000613788 DDIT4LQ96D03 193 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 GPR137Q96N19 417 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 PRSS27Q9BQR3 290 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 BDH2Q9BUT1 245 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 PLSCR2Q9NRY7 297 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 TMCC3Q9ULS5 477 aa13.28□□□□□ -0.28
CD48-203ENST00000613788 RRP15Q9Y3B9 282 aaKnown RBP13.28□□□□□ -0.28
CD48-203ENST00000613788 CACNA1BQ00975 2339 aa13.27□□□□□ -0.28
CD48-203ENST00000613788 PCNX3Q9H6A9 2034 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 A8MVM7 634 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 H3BML4 177 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 TNFRSF11BO00300 401 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 AQP7O14520 342 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 EFNA2O43921 213 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 WISP1O95388 367 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 BMP7P18075 431 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 ARHGDIAP52565 204 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 BCL2A1Q16548 175 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 FGD3Q5JSP0 725 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 DCST1Q5T197 706 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 ARHGAP11AQ6P4F7 1023 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 RNF113BQ8IZP6 322 aaKnown RBP13.27□□□□□ -0.29
CD48-203ENST00000613788 GHDCQ8N2G8 530 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 ATP6V1C2Q8NEY4 427 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 OR52J3Q8NH60 311 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 STK35Q8TDR2 534 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 TMEM239Q8WW34 195 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 ACOT11Q8WXI4 607 aaPredicted RBP13.27□□□□□ -0.29
CD48-203ENST00000613788 LRTOMTQ8WZ04 291 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 TMEM43Q9BTV4 400 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 SLC19A3Q9BZV2 496 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 MAN2C1Q9NTJ4 1040 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 ASF1BQ9NVP2 202 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 SAMHD1Q9Y3Z3 626 aaKnown RBP13.27□□□□□ -0.29
CD48-203ENST00000613788 LIPGQ9Y5X9 500 aa13.27□□□□□ -0.29
CD48-203ENST00000613788 TMEM72A0PK05 275 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 E2F6O75461 281 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 TFPIP10646 304 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 POU3F2P20265 443 aaPredicted RBP13.26□□□□□ -0.29
CD48-203ENST00000613788 IL11P20809 199 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 SYT14P1Q58G82 188 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 VASNQ6EMK4 673 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 ZNF730Q6ZMV8 503 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 LINC00471Q8N535 108 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 SLC7A13Q8TCU3 470 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 SARAFQ96BY9 339 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 ALPK1Q96QP1 1244 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 EPYCQ99645 322 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 BARD1Q99728 777 aaKnown RBP13.26□□□□□ -0.29
CD48-203ENST00000613788 ZNF426Q9BUY5 554 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 KLHL4Q9C0H6 718 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 DCLRE1BQ9H816 532 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 MED31Q9Y3C7 131 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 LYVE1Q9Y5Y7 322 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 BSNQ9UPA5 3926 aa13.26□□□□□ -0.29
CD48-203ENST00000613788 HTR3EA5X5Y0 456 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 OR14I1A6ND48 311 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 BAG2O95816 211 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 DNAJA1P31689 397 aaKnown RBP13.25□□□□□ -0.29
CD48-203ENST00000613788 TMEM176BQ3YBM2 270 aaPredicted RBP13.25□□□□□ -0.29
CD48-203ENST00000613788 PDSS1Q5T2R2 415 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 PODNL1Q6PEZ8 512 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 WDR88Q6ZMY6 472 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 TMEM255BQ8WV15 326 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 SMPDL3BQ92485 455 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 CENPNQ96H22 339 aaPredicted RBP13.25□□□□□ -0.29
CD48-203ENST00000613788 SLX1AQ9BQ83 275 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 POTEKPQ9BYX7 375 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 TMEM185BQ9H7F4 350 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 KRCC1Q9NPI7 259 aaPredicted RBP13.25□□□□□ -0.29
CD48-203ENST00000613788 HDGFL3Q9Y3E1 203 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 U3KQV3 271 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 NBEAQ8NFP9 2946 aa13.25□□□□□ -0.29
CD48-203ENST00000613788 A0A087WUU8 490 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 TRBV4-1A0A0J9YWV2 114 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 A0A1B0GTH9 108 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 WISP2O76076 250 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 CPN1P15169 458 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 FUT4P22083 530 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 SFTPDP35247 375 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 IFNGR2P38484 337 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 LIMS1P48059 325 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 STARP49675 285 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 LHX2P50458 406 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 RCN1Q15293 331 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 EXOC3L2Q2M3D2 409 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 PRR30Q53SZ7 412 aaPredicted RBP13.24□□□□□ -0.29
CD48-203ENST00000613788 ESPNLQ6ZVH7 1005 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 MBOAT2Q6ZWT7 520 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 AMIGO2Q86SJ2 522 aa13.24□□□□□ -0.29
CD48-203ENST00000613788 CDK20Q8IZL9 346 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms