RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 IFNA14P01570 189 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 IL2RAP01589 272 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 FESP07332 822 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 HTR2AP28223 471 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 PON3Q15166 354 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 CDSNQ15517 529 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 LRRC23Q53EV4 343 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 PDSS1Q5T2R2 415 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 LSRQ86X29 649 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 CCDC71Q8IV32 467 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 DEFB107AQ8IZN7 70 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 RNF148Q8N7C7 305 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 NAXEQ8NCW5 288 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 RBM15BQ8NDT2 890 aaKnown RBP14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 FNDC9Q8TBE3 224 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 FIG4Q92562 907 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 OSTF1Q92882 214 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 C3orf49Q96BT1 292 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 CDRT15Q96T59 188 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 TM9SF2Q99805 663 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 PRR14Q9BWN1 585 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 TESQ9UGI8 421 aaKnown RBP14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 PACSIN3Q9UKS6 424 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 SPIN1Q9Y657 262 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 MED12LQ86YW9 2145 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 A0A1W2PNR3 127 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 M0R3H8 397 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 GSTA4O15217 222 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 CCNA2P20248 432 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 FKBP2P26885 142 aaKnown RBP14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 SLC7A1P30825 629 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 MAP2K6P52564 334 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 CARD18P57730 90 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 CYBRD1Q53TN4 286 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 YTHDF3Q7Z739 585 aaKnown RBP14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 OR4D11Q8NGI4 311 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 OR6T1Q8NGN1 323 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 PSMG3-AS1Q96PY0 264 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 OR5B2Q96R09 309 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 OR11A1Q9GZK7 315 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 CD300AQ9UGN4 299 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 BAG5Q9UL15 447 aa14.84□□□□□ -0.03
CCDC28A-202ENST00000611852 TMEM72A0PK05 275 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 HSPB2A8KAH6 182 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 ZNF208O43345 1280 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 RCBTB2O95199 551 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 HSD17B1P14061 328 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 CXCR1P25024 350 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 HTR1EP28566 365 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 CHRNB4P30926 498 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 NCALDP61601 193 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 NPTX1Q15818 432 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 HSPB2Q16082 182 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 SAMD4BQ5PRF9 694 aaKnown RBP14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 RINLQ6ZS11 566 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 P4HA3Q7Z4N8 544 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 ATG4DQ86TL0 474 aaPredicted RBP14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 RANBP3LQ86VV4 465 aaPredicted RBP14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 RBM45Q8IUH3 476 aaKnown RBP14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 FAM156AQ8NDB6 213 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 OR52E4Q8NGH9 312 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 CA5BP1Q8WTZ4 195 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 ASB5Q8WWX0 329 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 PROX1Q92786 737 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 ARL5BQ96KC2 179 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 ZNF559Q9BR84 538 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 SRXN1Q9BYN0 137 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 TRIM2Q9C040 744 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 ICE1Q9Y2F5 2266 aa14.83□□□□□ -0.04
CCDC28A-202ENST00000611852 A0A1B0GWA3 101 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 FMO6PO60774 539 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 AQP8O94778 261 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 UBOX5O94941 541 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 TFPIP10646 304 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 NCK1P16333 377 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 GGT1P19440 569 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 CLK1P49759 484 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 RAC3P60763 192 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 SELENOWP63302 87 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 FXNQ16595 210 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 TMPPEQ6ZT21 453 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 LIX1LQ8IVB5 337 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 LILRB4Q8NHJ6 448 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 VANGL1Q8TAA9 524 aaPredicted RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 CPNE4Q96A23 557 aaPredicted RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 INTS12Q96CB8 462 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 ZFP3Q96NJ6 502 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 MCHR1Q99705 422 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 RNF122Q9H9V4 155 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 TIGARQ9NQ88 270 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 RPS6KB2Q9UBS0 482 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 EGFL7Q9UHF1 273 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 MCTS1Q9ULC4 181 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 SLC9A8Q9Y2E8 581 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 SH3GLB1Q9Y371 365 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 INTS1Q8N201 2190 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 PTPN13Q12923 2485 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 ZC3H12DA2A288 527 aaKnown RBP14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 SYNGR4O95473 234 aa14.82□□□□□ -0.04
CCDC28A-202ENST00000611852 CLDN14O95500 239 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms