RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 A6NJ64 397 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 SMAD9O15198 467 aaKnown RBP19.08■□□□□ 0.65
UPF1-207ENST00000599848 SDC1P18827 310 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 CAV2P51636 162 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 CD83Q01151 205 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 OR13H1Q8NG92 308 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 OCSTAMPQ9BR26 566 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 OR2S2Q9NQN1 319 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 CLEC1BQ9P126 229 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 B3GALT1Q9Y5Z6 326 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 TRAV6A0A075B6T7 132 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 ARNTLO00327 626 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 DPM1O60762 260 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 SRPXP78539 464 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 OR1Q1Q15612 314 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 TMEM31Q5JXX7 168 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 ZNF322Q6U7Q0 402 aaPredicted RBP19.08■□□□□ 0.64
UPF1-207ENST00000599848 HMGN2P46Q86SG4 172 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 ZMYND19Q96E35 227 aaPredicted RBP19.08■□□□□ 0.64
UPF1-207ENST00000599848 MVB12AQ96EY5 273 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 MUS81Q96NY9 551 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 SNX18Q96RF0 628 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 MENTQ9BUN1 341 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 LYRM4Q9HD34 91 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 A0A1W2PPK0 400 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 RFXAPO00287 272 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 RAB13P51153 203 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 FOXC1Q12948 553 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 ASRGL1Q7L266 308 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 SLC35F3Q8IY50 421 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 C7orf34Q96L11 122 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 CCDC106Q9BWC9 280 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 GLTPQ9NZD2 209 aa19.08■□□□□ 0.64
UPF1-207ENST00000599848 COL16A1Q07092 1604 aaPredicted RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 TMEM221A6NGB7 291 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 M0R3H8 397 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 PRAF2O60831 178 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 ADAM23O75077 832 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 MED6O75586 246 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 TAS2R30P59541 319 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 PRSS48Q7RTY5 328 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 LSM14AQ8ND56 463 aaKnown RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 OR5W2Q8NH69 310 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 LMF1Q96S06 567 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 MED17Q9NVC6 651 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 TEX10Q9NXF1 929 aaPredicted RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 C5AR2Q9P296 337 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 A0A1W2PPV4 95 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 FZD7O75084 574 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 AIFM1O95831 613 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 ADRA1AP35348 466 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 ADAMTS14Q8WXS8 1223 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 INTS12Q96CB8 462 aaKnown RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 NT5DC2Q9H857 520 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 ZNF736B4DX44 427 aaPredicted RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 MT-ATP6P00846 226 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 IFNA17P01571 189 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 CD53P19397 219 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 GMPRP36959 345 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 LRRC37A5PQ49AS3 106 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 NADK2Q4G0N4 442 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 HACD4Q5VWC8 232 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 ZNF845Q96IR2 970 aaPredicted RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 CDCP1Q9H5V8 836 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 GCM1Q9NP62 436 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 SIDT1Q9NXL6 827 aaKnown RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 CARD8Q9Y2G2 431 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 RFPL3O75679 317 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 RAB3DO95716 219 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 ADH4P08319 380 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 EPHA1P21709 976 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 HTR6P50406 440 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 PPP5CP53041 499 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 EXOSC6Q5RKV6 272 aaKnown RBP19.07■□□□□ 0.64
UPF1-207ENST00000599848 LETMD1Q6P1Q0 360 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 SULF2Q8IWU5 870 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 DUSP13Q9UII6 198 aa19.07■□□□□ 0.64
UPF1-207ENST00000599848 CDHR4A6H8M9 788 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 H0YIV9 168 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 M0QZ24 198 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 ZNF749O43361 778 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 ENSAO43768 121 aaKnown RBP19.06■□□□□ 0.64
UPF1-207ENST00000599848 PRAMEF20Q5VT98 475 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 DPY19L2P1Q6NXN4 242 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 HAGHLQ6PII5 290 aaPredicted RBP19.06■□□□□ 0.64
UPF1-207ENST00000599848 OR56B1Q8NGI3 324 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 MAN2C1Q9NTJ4 1040 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 DCDC2BA2VCK2 349 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 ALDH3B2P48448 385 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 DUSP19Q8WTR2 217 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 IL1F10Q8WWZ1 152 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 H1FXQ92522 213 aaKnown RBP19.06■□□□□ 0.64
UPF1-207ENST00000599848 TMED7-TICAM2A0A0A6YYA0 188 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 RPS5P46782 204 aaKnown RBP19.06■□□□□ 0.64
UPF1-207ENST00000599848 SLC10A1Q14973 349 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 AGAP6Q5VW22 663 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 C3orf58Q8NDZ4 430 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 MUL1Q969V5 352 aa19.06■□□□□ 0.64
UPF1-207ENST00000599848 CIDECQ96AQ7 238 aaPredicted RBP19.06■□□□□ 0.64
UPF1-207ENST00000599848 PHOX2BQ99453 314 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms