RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 COPZ1P61923 177 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 GNGT1P63211 74 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 GTF2IRD2BQ6EKJ0 949 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 WBP2NLQ6ICG8 309 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 DHRS4L2Q6PKH6 230 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 TMPPEQ6ZT21 453 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 FCRLAQ7L513 359 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 GTF2IRD2Q86UP8 949 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 KIF18BQ86Y91 864 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 ZZZ3Q8IYH5 903 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 CADM2Q8N3J6 435 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 POU5F2Q8N7G0 328 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 PCYOX1LQ8NBM8 494 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 OR10A6Q8NH74 314 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 RNF128Q8TEB7 428 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 ABHD3Q8WU67 409 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 ZNF607Q96SK3 696 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 RSPO3Q9BXY4 272 aaPredicted RBP12.38□□□□□ -0.43
UPF1-205ENST00000598209 OR11A1Q9GZK7 315 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 ADAM19Q9H013 955 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 OPN3Q9H1Y3 402 aaPredicted RBP12.38□□□□□ -0.43
UPF1-205ENST00000598209 SLC24A3Q9HC58 644 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 GLRX2Q9NS18 164 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 GALNT8Q9NY28 637 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 PRDM4Q9UKN5 801 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 PROCRQ9UNN8 238 aa12.38□□□□□ -0.43
UPF1-205ENST00000598209 FREM1Q5H8C1 2179 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 IGHV3-15A0A0B4J1V0 119 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 TMEM72A0PK05 275 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 PRORSD1PA6NEY8 169 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 SULT2B1O00204 365 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 TPST1O60507 370 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 SERPINB7O75635 380 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 CGAP01215 116 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 ENPP1P22413 925 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 FKBP2P26885 142 aaKnown RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 SSTR2P30874 369 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 PCGF2P35227 344 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 CPOXP36551 454 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 KIR2DL3P43628 341 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 CLK1P49759 484 aaKnown RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 DIO1P49895 249 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 GZMMP51124 257 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 PCBP3P57721 371 aaKnown RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 CSNK2A1P68400 391 aaPredicted RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 HOXC5Q00444 222 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 MYBPHQ13203 477 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 RNPS1Q15287 305 aaKnown RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 RABL3Q5HYI8 236 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 CPLX4Q7Z7G2 160 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 MTDHQ86UE4 582 aaKnown RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 COMTD1Q86VU5 262 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 LSRQ86X29 649 aaPredicted RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 OR8J3Q8NGG0 315 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 OR6K3Q8NGY3 331 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 RP9Q8TA86 221 aaKnown RBP12.37□□□□□ -0.43
UPF1-205ENST00000598209 SLC35B4Q969S0 331 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 RCN3Q96D15 328 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 DNAJA3Q96EY1 480 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 C14orf79Q96F83 325 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 ARL5BQ96KC2 179 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 SH3GL1Q99961 368 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 PIF1Q9H611 641 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 GID8Q9NWU2 228 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 KCNN3Q9UGI6 736 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 HDGFL3Q9Y3E1 203 aa12.37□□□□□ -0.43
UPF1-205ENST00000598209 SMAD9O15198 467 aaKnown RBP12.36□□□□□ -0.43
UPF1-205ENST00000598209 ZNF208O43345 1280 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 SNX3O60493 162 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 PRKD3O94806 890 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 MFN2O95140 757 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 PMS2P2O95744 297 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 FESP07332 822 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 CD8BP10966 210 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 COX4I1P13073 169 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 KLK2P20151 261 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 CXCR1P25024 350 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 AGTR1P30556 359 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 MAP2K6P52564 334 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 SORDQ00796 357 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 TLE4Q04727 773 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 DMTNQ08495 405 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 GLIPR1L2Q4G1C9 344 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 ZNF474Q6S9Z5 364 aaPredicted RBP12.36□□□□□ -0.43
UPF1-205ENST00000598209 TREML1Q86YW5 311 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 ARMC8Q8IUR7 673 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 SLC30A8Q8IWU4 369 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 SLC43A2Q8N370 569 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 ZNF610Q8N9Z0 462 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 BHLHE22Q8NFJ8 381 aaPredicted RBP12.36□□□□□ -0.43
UPF1-205ENST00000598209 DDIT4LQ96D03 193 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 ECSITQ9BQ95 431 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 ZNF559Q9BR84 538 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 PLSCR4Q9NRQ2 329 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 CRIM1Q9NZV1 1036 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 KLHL13Q9P2N7 655 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 SLC13A4Q9UKG4 626 aa12.36□□□□□ -0.43
UPF1-205ENST00000598209 NAV2Q8IVL1 2488 aa12.35□□□□□ -0.43
UPF1-205ENST00000598209 ZC3H12DA2A288 527 aaKnown RBP12.35□□□□□ -0.43
UPF1-205ENST00000598209 TUBAL3A6NHL2 446 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms