RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZNF239Q16600 458 aaKnown RBP13.46□□□□□ -0.25
UPF1-202ENST00000594243 TMPPEQ6ZT21 453 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 FAM214BQ7L5A3 538 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 ARPINQ7Z6K5 226 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 CALHM3Q86XJ0 350 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 TREML1Q86YW5 311 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 MCEMP1Q8IX19 187 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 CADM2Q8N3J6 435 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 CNEP1R1Q8N9A8 125 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 SLC26A7Q8TE54 656 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 RASSF5Q8WWW0 418 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 GMPPAQ96IJ6 420 aaPredicted RBP13.46□□□□□ -0.25
UPF1-202ENST00000594243 SLC24A3Q9HC58 644 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 JKAMPQ9P055 326 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 OSGIN1Q9UJX0 560 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 PACSIN3Q9UKS6 424 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 TMED7Q9Y3B3 224 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 HDGFL3Q9Y3E1 203 aa13.46□□□□□ -0.25
UPF1-202ENST00000594243 CENPEQ02224 2701 aa13.46□□□□□ -0.26
UPF1-202ENST00000594243 EEF1E1-BLOC1S5C9J1V9 151 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 SULT2B1O00204 365 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 EEF1E1O43324 174 aaKnown RBP13.45□□□□□ -0.26
UPF1-202ENST00000594243 TPST1O60507 370 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 TNFSF13O75888 250 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 DCTN3O75935 186 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 PRKD3O94806 890 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 C8BP07358 591 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 PRG2P13727 222 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 CCNA2P20248 432 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 KIR2DL2P43627 348 aaPredicted RBP13.45□□□□□ -0.26
UPF1-202ENST00000594243 DIO1P49895 249 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 VEZF1Q14119 521 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 FBXL19-AS1Q494R0 122 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 ZNF787Q6DD87 383 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 HACD2Q6Y1H2 254 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 CCDC80Q76M96 950 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 SLC43A2Q8N370 569 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 ROBO4Q8WZ75 1007 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 RNASE6Q93091 150 aaKnown RBP13.45□□□□□ -0.26
UPF1-202ENST00000594243 ZNF583Q96ND8 569 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 LRRC37BQ96QE4 947 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 CCT8L2Q96SF2 557 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 GPATCH1Q9BRR8 931 aaKnown RBP13.45□□□□□ -0.26
UPF1-202ENST00000594243 COQ10BQ9H8M1 238 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 NPDC1Q9NQX5 325 aaPredicted RBP13.45□□□□□ -0.26
UPF1-202ENST00000594243 RPS6KB2Q9UBS0 482 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 EMC9Q9Y3B6 208 aa13.45□□□□□ -0.26
UPF1-202ENST00000594243 KIAA1549Q9HCM3 1950 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 NDUFAB1O14561 156 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 FRS3O43559 492 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 GCM2O75603 506 aaPredicted RBP13.44□□□□□ -0.26
UPF1-202ENST00000594243 PMS2P2O95744 297 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 ENPP1P22413 925 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 UQCRC1P31930 480 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 CTBP2P56545 445 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 DMTNQ08495 405 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 GLIPR1L2Q4G1C9 344 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 GKAP1Q5VSY0 366 aaPredicted RBP13.44□□□□□ -0.26
UPF1-202ENST00000594243 MEX3BQ6ZN04 569 aaKnown RBP13.44□□□□□ -0.26
UPF1-202ENST00000594243 FCRLAQ7L513 359 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 LSMEM1Q8N8F7 131 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 ANKS4BQ8N8V4 417 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 SMYD1Q8NB12 490 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 ACBD4Q8NC06 268 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 RNF128Q8TEB7 428 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 MARVELD3Q96A59 401 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 STARD4Q96DR4 205 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 ZHX1-C8orf76Q96EF9 292 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 RSPO3Q9BXY4 272 aaPredicted RBP13.44□□□□□ -0.26
UPF1-202ENST00000594243 SRXN1Q9BYN0 137 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 GP6Q9HCN6 339 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 TMEM181Q9P2C4 612 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 ADAM21Q9UKJ8 722 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 TRAPPC4Q9Y296 219 aa13.44□□□□□ -0.26
UPF1-202ENST00000594243 TMEM72A0PK05 275 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 ELOVL7A1L3X0 281 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 A8MXE2 369 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 FAM220BPB1ANY3 271 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 MSTNO14793 375 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 DNPH1O43598 174 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 SS18L1O75177 396 aaPredicted RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 SMNDC1O75940 238 aaKnown RBP eCLIP13.43□□□□□ -0.26
UPF1-202ENST00000594243 LGI1O95970 557 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 FAM107AO95990 144 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 IFNA14P01570 189 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 CD8BP10966 210 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 IGFBP2P18065 325 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 CPA2P48052 419 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 KCNJ5P48544 419 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 NUDT2P50583 147 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 RGS8P57771 180 aaPredicted RBP13.43□□□□□ -0.26
UPF1-202ENST00000594243 NCALDP61601 193 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 SIRPAP78324 504 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 MYBPHQ13203 477 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 GUSBP1Q15486 140 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 DUSP7Q16829 419 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 TMEM201Q5SNT2 666 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 VWA1Q6PCB0 445 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 BTLAQ7Z6A9 289 aa13.43□□□□□ -0.26
UPF1-202ENST00000594243 LUZP2Q86TE4 346 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms