RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 UQCRC1P31930 480 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 RAC3P60763 192 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 COPZ1P61923 177 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 DMTNQ08495 405 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 VMACQ2NL98 169 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 GLIPR1L2Q4G1C9 344 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 WBP2NLQ6ICG8 309 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 FAM214BQ7L5A3 538 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 BTLAQ7Z6A9 289 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 LUZP2Q86TE4 346 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 LSRQ86X29 649 aaPredicted RBP13.02□□□□□ -0.33
VRK3-206ENST00000594090 CALHM3Q86XJ0 350 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 ARMC8Q8IUR7 673 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 CADM2Q8N3J6 435 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 BHLHE22Q8NFJ8 381 aaPredicted RBP13.02□□□□□ -0.33
VRK3-206ENST00000594090 ABHD3Q8WU67 409 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 REXO5Q96IC2 774 aaKnown RBP13.02□□□□□ -0.33
VRK3-206ENST00000594090 GMPPAQ96IJ6 420 aaPredicted RBP13.02□□□□□ -0.33
VRK3-206ENST00000594090 ARL5BQ96KC2 179 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 ECSITQ9BQ95 431 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 ADAM19Q9H013 955 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 PIF1Q9H611 641 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 FOXD3Q9UJU5 478 aaPredicted RBP13.02□□□□□ -0.33
VRK3-206ENST00000594090 CLEC4AQ9UMR7 237 aa13.02□□□□□ -0.33
VRK3-206ENST00000594090 IGHV3-15A0A0B4J1V0 119 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 TMEM72A0PK05 275 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 MSTNO14793 375 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 ZNF208O43345 1280 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 GCM2O75603 506 aaPredicted RBP13.01□□□□□ -0.33
VRK3-206ENST00000594090 SMNDC1O75940 238 aaKnown RBP eCLIP13.01□□□□□ -0.33
VRK3-206ENST00000594090 TFPIP10646 304 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 PRF1P14222 555 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 CCNA2P20248 432 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 CPA2P48052 419 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 DIO1P49895 249 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 HOXC5Q00444 222 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 MYBPHQ13203 477 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 INTS11Q5TA45 600 aaKnown RBP13.01□□□□□ -0.33
VRK3-206ENST00000594090 TMPPEQ6ZT21 453 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 FCRLAQ7L513 359 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 MCEMP1Q8IX19 187 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 SMYD1Q8NB12 490 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 OR11A1Q9GZK7 315 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 GLRX2Q9NS18 164 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 EMC9Q9Y3B6 208 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 HDGFL3Q9Y3E1 203 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 NBPF19A0A087WUL8 3843 aa13.01□□□□□ -0.33
VRK3-206ENST00000594090 SETXQ7Z333 2677 aaKnown RBP13□□□□□ -0.33
VRK3-206ENST00000594090 A8MXE2 369 aa13□□□□□ -0.33
VRK3-206ENST00000594090 AIM2O14862 343 aa13□□□□□ -0.33
VRK3-206ENST00000594090 SMAD9O15198 467 aaKnown RBP13□□□□□ -0.33
VRK3-206ENST00000594090 PMS2P2O95744 297 aa13□□□□□ -0.33
VRK3-206ENST00000594090 CGAP01215 116 aa13□□□□□ -0.33
VRK3-206ENST00000594090 OPN1SWP03999 348 aa13□□□□□ -0.33
VRK3-206ENST00000594090 ENPP1P22413 925 aa13□□□□□ -0.33
VRK3-206ENST00000594090 AGTR1P30556 359 aa13□□□□□ -0.33
VRK3-206ENST00000594090 CLK1P49759 484 aaKnown RBP13□□□□□ -0.33
VRK3-206ENST00000594090 MAP2K6P52564 334 aa13□□□□□ -0.33
VRK3-206ENST00000594090 CSNK2A1P68400 391 aaPredicted RBP13□□□□□ -0.33
VRK3-206ENST00000594090 RNPS1Q15287 305 aaKnown RBP13□□□□□ -0.33
VRK3-206ENST00000594090 GTF2IRD2BQ6EKJ0 949 aa13□□□□□ -0.33
VRK3-206ENST00000594090 ARPINQ7Z6K5 226 aa13□□□□□ -0.33
VRK3-206ENST00000594090 PIGWQ7Z7B1 504 aa13□□□□□ -0.33
VRK3-206ENST00000594090 PATL1Q86TB9 770 aaKnown RBP13□□□□□ -0.33
VRK3-206ENST00000594090 GTF2IRD2Q86UP8 949 aa13□□□□□ -0.33
VRK3-206ENST00000594090 OR6K3Q8NGY3 331 aa13□□□□□ -0.33
VRK3-206ENST00000594090 C3orf49Q96BT1 292 aa13□□□□□ -0.33
VRK3-206ENST00000594090 DDIT4LQ96D03 193 aa13□□□□□ -0.33
VRK3-206ENST00000594090 DNAJA3Q96EY1 480 aa13□□□□□ -0.33
VRK3-206ENST00000594090 ZNF583Q96ND8 569 aa13□□□□□ -0.33
VRK3-206ENST00000594090 RBM24Q9BX46 236 aaKnown RBP13□□□□□ -0.33
VRK3-206ENST00000594090 GALNT8Q9NY28 637 aa13□□□□□ -0.33
VRK3-206ENST00000594090 FAM53CQ9NYF3 392 aa13□□□□□ -0.33
VRK3-206ENST00000594090 SLC13A4Q9UKG4 626 aa13□□□□□ -0.33
VRK3-206ENST00000594090 USP22Q9UPT9 525 aa13□□□□□ -0.33
VRK3-206ENST00000594090 ARL2BPQ9Y2Y0 163 aa13□□□□□ -0.33
VRK3-206ENST00000594090 CRYBG3Q68DQ2 2970 aa13□□□□□ -0.33
VRK3-206ENST00000594090 ZC3H12DA2A288 527 aaKnown RBP12.99□□□□□ -0.33
VRK3-206ENST00000594090 CCT8L1PA6NM43 557 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 FAM220BPB1ANY3 271 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 M0QX08 132 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 SULT2B1O00204 365 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 PRKD3O94806 890 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 FESP07332 822 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 CD8BP10966 210 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 KLK2P20151 261 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 CXCR1P25024 350 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 HTR2AP28223 471 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 CPOXP36551 454 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 PEX19P40855 299 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 CTBP2P56545 445 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 RGS8P57771 180 aaPredicted RBP12.99□□□□□ -0.33
VRK3-206ENST00000594090 NCALDP61601 193 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 SORDQ00796 357 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 SNTB1Q13884 538 aaKnown RBP12.99□□□□□ -0.33
VRK3-206ENST00000594090 DUSP7Q16829 419 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 ERICH5Q6P6B1 374 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 GDF7Q7Z4P5 450 aa12.99□□□□□ -0.33
VRK3-206ENST00000594090 ATG4DQ86TL0 474 aaPredicted RBP12.99□□□□□ -0.33
VRK3-206ENST00000594090 ZNF295-AS1Q8N0V1 137 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms