RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PAPOLBQ9NRJ5 636 aaKnown RBP22.74■■□□□ 1.23
SHMT1-207ENST00000580002 MGAT4BQ9UQ53 548 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 TMED7Q9Y3B3 224 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 PCDHGB5Q9Y5G0 923 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 AP4B1Q9Y6B7 739 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 PTPRQQ9UMZ3 2332 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 NCKAP5O14513 1909 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 KLF4O43474 513 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 ZIC3O60481 467 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 GNAO1P09471 354 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 DPP4P27487 766 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 PRKCDQ05655 676 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 SWT1Q5T5J6 900 aaKnown RBP22.73■■□□□ 1.23
SHMT1-207ENST00000580002 GRINAQ7Z429 371 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 KIF18BQ86Y91 864 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 ATP6V1C2Q8NEY4 427 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 CYGBQ8WWM9 190 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 KTI12Q96EK9 354 aaPredicted RBP22.73■■□□□ 1.23
SHMT1-207ENST00000580002 DGCR6LQ9BY27 220 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 OR11A1Q9GZK7 315 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 RYDENQ9NUL5 291 aaKnown RBP22.73■■□□□ 1.23
SHMT1-207ENST00000580002 MED31Q9Y3C7 131 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 H0YJX3 145 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 CXCR1P25024 350 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 TNFSF10P50591 281 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 ZNF41P51814 821 aaPredicted RBP22.73■■□□□ 1.23
SHMT1-207ENST00000580002 POLR2HP52434 150 aaKnown RBP22.73■■□□□ 1.23
SHMT1-207ENST00000580002 ALDH6A1Q02252 535 aaKnown RBP22.73■■□□□ 1.23
SHMT1-207ENST00000580002 LTBQ06643 244 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 LRRC17Q8N6Y2 441 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 SMAD5Q99717 465 aaKnown RBP22.73■■□□□ 1.23
SHMT1-207ENST00000580002 ADI1Q9BV57 179 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 UCK2Q9BZX2 261 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 RNF32Q9H0A6 362 aa22.73■■□□□ 1.23
SHMT1-207ENST00000580002 ENO4A6NNW6 628 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 SUSD5O60279 629 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 NME2P1O60361 137 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 ADAP00813 363 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 PNMTP11086 282 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 NME2P22392 152 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 GSSP48637 474 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 GNPDA2Q8TDQ7 276 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 ST8SIA1Q92185 356 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 TFAP2CQ92754 450 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 BPIFA2Q96DR5 249 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 HS6ST2Q96MM7 605 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 PTGES2Q9H7Z7 377 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 C8orf4Q9NR00 106 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 FAM118AQ9NWS6 357 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 C15orf41Q9Y2V0 281 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 MPDZO75970 2070 aa22.72■■□□□ 1.23
SHMT1-207ENST00000580002 ETV2O00321 342 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-207ENST00000580002 CACNA1GO43497 2377 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 CBR3O75828 277 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 HK1P19367 917 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 RBM34P42696 430 aaKnown RBP22.71■■□□□ 1.23
SHMT1-207ENST00000580002 ADARB1P78563 741 aaKnown RBP22.71■■□□□ 1.23
SHMT1-207ENST00000580002 ZNF766Q5HY98 468 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 TMEM236Q5W0B7 351 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 UNQ6494/PRO21346Q6UXR6 183 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 YRDCQ86U90 279 aaKnown RBP22.71■■□□□ 1.23
SHMT1-207ENST00000580002 RNF113BQ8IZP6 322 aaKnown RBP22.71■■□□□ 1.23
SHMT1-207ENST00000580002 TMEM234Q8WY98 164 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 FAM173AQ9BQD7 235 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 TMEM185BQ9H7F4 350 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 ZNF556Q9HAH1 456 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 ZZEF1O43149 2961 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 FREM3P0C091 2139 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 TOMM20Q15388 145 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 SLC25A53Q5H9E4 307 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 LRRC69Q6ZNQ3 347 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 PNPLA5Q7Z6Z6 429 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-207ENST00000580002 DHRSXQ8N5I4 330 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 EXTL1Q92935 676 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 TAAR8Q969N4 342 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 CRELD1Q96HD1 420 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 PLA2G12AQ9BZM1 189 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 ENKD1Q9H0I2 346 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 EGLN3Q9H6Z9 239 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 ZFP64Q9NPA5 681 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 IL20RAQ9UHF4 553 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 POFUT2Q9Y2G5 429 aa22.71■■□□□ 1.23
SHMT1-207ENST00000580002 CH25HO95992 272 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 CELA3AP09093 270 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 PEPDP12955 493 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 POU1F1P28069 291 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 MEOX1P50221 254 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 DLX5P56178 289 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 CTBP2P56545 445 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 DSCR4P56555 118 aaPredicted RBP22.7■■□□□ 1.22
SHMT1-207ENST00000580002 C19orf57Q0VDD7 668 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 NPRL3Q12980 569 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 TAF11Q15544 211 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 TBR1Q16650 682 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 SLC36A3Q495N2 470 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 BROXQ5VW32 411 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 LINC00471Q8N535 108 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 SCMH1Q96GD3 660 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 MOGAT1Q96PD6 335 aa22.7■■□□□ 1.22
SHMT1-207ENST00000580002 UBQLN3Q9H347 655 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms