RNA–Protein interactions for RNA: ENST00000576921.1

HCFC1R1-209, Transcript of host cell factor C1 regulator 1, human

TSL 1 (best)

Gene HCFC1R1, Length 1,199 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCFC1R1-209	ENST00000576921	TMED7-TICAM2	A0A0A6YYA0	188 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	CYTIP	O60759	359 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	NUDT7	P0C024	238 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	GKN3P	P0CG01	181 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HTR3A	P46098	478 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	POLR2H	P52434	150 aa	Known RBP	18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	EPS8	Q12929	822 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	C22orf34	Q6ZV56	151 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	CXorf67	Q86X51	503 aa	Predicted RBP	18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ADGRG3	Q86Y34	549 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	MAL2	Q969L2	176 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ZNF775	Q96BV0	537 aa	Predicted RBP	18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ZHX1-C8orf76	Q96EF9	292 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ZNF300	Q96RE9	604 aa	Predicted RBP	18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	FOXC2	Q99958	501 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	NPHS2	Q9NP85	383 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	SLC25A37	Q9NYZ2	338 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	DCTN4	Q9UJW0	460 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	TMED7	Q9Y3B3	224 aa		18.8	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	CDHR4	A6H8M9	788 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ATE1	O95260	518 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	PPP3CB	P16298	524 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HOXB9	P17482	250 aa	Predicted RBP	18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	NCF2	P19878	526 aa	Predicted RBP	18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	TACR3	P29371	465 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ATP4B	P51164	291 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	FADD	Q13158	208 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	LARS2	Q15031	903 aa	Known RBP	18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ALKBH2	Q6NS38	261 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	WFDC8	Q8IUA0	241 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ZNF440	Q8IYI8	595 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	BCO1	Q9HAY6	547 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	SLAMF8	Q9P0V8	285 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	OSGIN1	Q9UJX0	560 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ING1	Q9UK53	422 aa	Predicted RBP	18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HDGFL3	Q9Y3E1	203 aa		18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	PRRC2A	P48634	2157 aa	Known RBP	18.79	■□□□□ 0.6
HCFC1R1-209	ENST00000576921		A0A0G2JPF8	293 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	TMEM72	A0PK05	275 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HNRNPCL2	B2RXH8	293 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HNRNPCL3	B7ZW38	293 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	C5orf58	C9J3I9	102 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HNRNPCL1	O60812	293 aa	Known RBP	18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	PMS2P2	O95744	297 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	THBD	P07204	575 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HNRNPCL4	P0DMR1	293 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	SLC1A3	P43003	542 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	OR2B6	P58173	313 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	TSC22D1	Q15714	1073 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	PAGE3	Q5JUK9	113 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	LRIF1	Q5T3J3	769 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ABLIM2	Q6H8Q1	611 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	MSRB3	Q8IXL7	192 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	CADM2	Q8N3J6	435 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	DDIT4L	Q96D03	193 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	HS3ST6	Q96QI5	342 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	UBTD1	Q9HAC8	227 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	A4GALT	Q9NPC4	353 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	GPR52	Q9Y2T5	361 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	PRR14L	Q5THK1	2151 aa		18.78	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	FAAH	O00519	579 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	GCM2	O75603	506 aa	Predicted RBP	18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	THBS1	P07996	1170 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	PSMB1	P20618	241 aa	Known RBP	18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	IL32	P24001	234 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	GCNT6	Q5T4J0	391 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	RNF220	Q5VTB9	566 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	MTDH	Q86UE4	582 aa	Known RBP	18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	GABRG1	Q8N1C3	465 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	S100PBP	Q96BU1	408 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	PRSS50	Q9UI38	385 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	ZNF232	Q9UNY5	417 aa		18.77	■□□□□ 0.6
HCFC1R1-209	ENST00000576921	EDF1	O60869	148 aa	Known RBP	18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	ADA	P00813	363 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	FKBP2	P26885	142 aa	Known RBP	18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	OR3A2	P47893	321 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	CLK1	P49759	484 aa	Known RBP	18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	COPZ1	P61923	177 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	IRX1	P78414	480 aa	Predicted RBP	18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	ZNF311	Q5JNZ3	666 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	GALNT5	Q7Z7M9	940 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	ZNF100	Q8IYN0	542 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	CLIP4	Q8N3C7	705 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	STEAP2	Q8NFT2	490 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	NFKBID	Q8NI38	313 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	BBS10	Q8TAM1	723 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	PIGX	Q8TBF5	258 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	KISS1R	Q969F8	398 aa	Predicted RBP	18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	ALPK1	Q96QP1	1244 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	CXXC4	Q9H2H0	198 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	RABEP2	Q9H5N1	569 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	ARMC7	Q9H6L4	198 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	SLC52A3	Q9NQ40	469 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	EMC3	Q9P0I2	261 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	VAPA	Q9P0L0	249 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	TMEM181	Q9P2C4	612 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	IFT52	Q9Y366	437 aa		18.76	■□□□□ 0.59
HCFC1R1-209	ENST00000576921	RAI1	Q7Z5J4	1906 aa	Predicted RBP	18.75	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms