RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SLPIP03973 132 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 OR2T7P0C7T2 308 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 PRKAR1AP10644 381 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 THRAP10827 490 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 PRPS2P11908 318 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SRD5A1P18405 259 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 MSR1P21757 451 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 FOXN2P32314 431 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 EIF2S3P41091 472 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 ALDH3B1P43353 468 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 PPT1P50897 306 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 ELLP55199 621 aaPredicted RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 SNRPEP62304 92 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 RPP38P78345 283 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 CRADDP78560 199 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 MRPS15P82914 257 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 DR1Q01658 176 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 DCAF12Q5T6F0 453 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 AGBL2Q5U5Z8 902 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 NKAIN2Q5VXU1 208 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 CAPRIN2Q6IMN6 1127 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 MFSD12Q6NUT3 480 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 NEPROQ6NW34 567 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 TTC27Q6P3X3 843 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 BTNL8Q6UX41 500 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 CEACAM20Q6UY09 585 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 ERASQ7Z444 233 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 YRDCQ86U90 279 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 OOSP2Q86WS3 158 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SFTPA2Q8IWL1 248 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 PIANPQ8IYJ0 282 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SLC7A5P1Q8MH63 180 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 PDIK1LQ8N165 341 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 RAB42Q8N4Z0 105 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 CLDN19Q8N6F1 224 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 ACVR1CQ8NER5 493 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 OR1J2Q8NGS2 313 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 LKAAEAR1Q8TD35 194 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 MAGEC3Q8TD91 643 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 TFGQ92734 400 aaPredicted RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 GGHQ92820 318 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SNAPC3Q92966 411 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 LRR1Q96L50 414 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 WWTR1Q9GZV5 400 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 TMPRSS5Q9H3S3 457 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SRMSQ9H3Y6 488 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 RAD21L1Q9H4I0 556 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 RGCCQ9H4X1 137 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 CDH20Q9HBT6 801 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 TREM1Q9NP99 234 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 TREX1Q9NSU2 369 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SLC39A1Q9NY26 324 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 ASIC5Q9NY37 505 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SEC14L3Q9UDX4 400 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 EPHA6Q9UF33 1036 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 OR14J1Q9UGF5 321 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SLC2A6Q9UGQ3 507 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 GAB2Q9UQC2 676 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 GRIP1Q9Y3R0 1128 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 HEMK1Q9Y5R4 338 aaPredicted RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 MAD1L1Q9Y6D9 718 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 PKD1L2Q7Z442 2459 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 HEATR5BQ9P2D3 2071 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 TMEM89A2RUT3 159 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 OR51F1A6NGY5 319 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 EFCAB7A8K855 629 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 GABRR3A8MPY1 467 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 A8MU76 341 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 E5RI56 91 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 POC1B-GALNT4F8VUJ3 575 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 GOLGA8MH3BSY2 632 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 PRAF2O60831 178 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 DBTP11182 482 aaKnown RBP5.53□□□□□ -1.52
VPS53-212ENST00000572259 OGNP20774 298 aaKnown RBP5.53□□□□□ -1.52
VPS53-212ENST00000572259 RPS3P23396 243 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS53-212ENST00000572259 CAPZBP47756 277 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 PTH2RP49190 550 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 MYBPC1Q00872 1141 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 CKAP4Q07065 602 aaKnown RBP5.53□□□□□ -1.52
VPS53-212ENST00000572259 PMPCAQ10713 525 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 ILF2Q12905 390 aaKnown RBP5.53□□□□□ -1.52
VPS53-212ENST00000572259 CALCOCO2Q13137 446 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 CUL3Q13618 768 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 GPR18Q14330 331 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 NCF4Q15080 339 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 CTU2Q2VPK5 515 aaKnown RBP5.53□□□□□ -1.52
VPS53-212ENST00000572259 TTLL9Q3SXZ7 439 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 HIKESHIQ53FT3 197 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 WLSQ5T9L3 541 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 UGT3A1Q6NUS8 523 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 CBLN3Q6UW01 205 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 PCSK4Q6UW60 755 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 SYT10Q6XYQ8 523 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 ARHGAP22Q7Z5H3 698 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 VTCN1Q7Z7D3 282 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 TMEM135Q86UB9 458 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 KMT5CQ86Y97 462 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 TRPV3Q8NET8 790 aa5.53□□□□□ -1.52
VPS53-212ENST00000572259 SKA2Q8WVK7 121 aaPredicted RBP5.53□□□□□ -1.52
VPS53-212ENST00000572259 LCN9Q8WX39 176 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms