RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ZNF559Q9BR84 538 aa8.09□□□□□ -1.11
LINC00558-201ENST00000569422 NEK6Q9HC98 313 aa8.09□□□□□ -1.11
LINC00558-201ENST00000569422 PCOLCE2Q9UKZ9 415 aa8.09□□□□□ -1.11
LINC00558-201ENST00000569422 OR10H1Q9Y4A9 318 aa8.09□□□□□ -1.11
LINC00558-201ENST00000569422 TDRD6O60522 2096 aaKnown RBP8.09□□□□□ -1.11
LINC00558-201ENST00000569422 A0A1B0GWA3 101 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 A0A1W2PRG6 482 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 IRGMA1A4Y4 181 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 FAM86C2PA6NEL3 165 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 IMPA2O14732 288 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 CHRNB1P11230 501 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 OR12D2P58182 307 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 AMZ1Q400G9 498 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ZNF57Q68EA5 555 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ASB18Q6ZVZ8 466 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 MEPCEQ7L2J0 689 aaKnown RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 FAM98AQ8NCA5 519 aaKnown RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 OR52E2Q8NGJ4 325 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ENKURQ8TC29 256 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 AP3S1Q92572 193 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 RIT1Q92963 219 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ANKRD9Q96BM1 317 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 TTYH2Q9BSA4 534 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 GSDMCQ9BYG8 508 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 FLRT3Q9NZU0 649 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 NUFIP1Q9UHK0 495 aaKnown RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ZNF221Q9UK13 617 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 SCML1Q9UN30 329 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 MEIOCA2RUB1 952 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 KLF4O43474 513 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 TNFSF14O43557 240 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 SDC3O75056 442 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 CBX7O95931 251 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 IGKV1D-16P01601 117 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ATP1B1P05026 303 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 DRD1P21728 446 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 IGFBP4P22692 258 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 GRPRP30550 384 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 PYCR1P32322 319 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 RPL4P36578 427 aaKnown RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 GSK3AP49840 483 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 OR10A3P58181 314 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 E2F1Q01094 437 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 PLAURQ03405 335 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 TBRG1Q3YBR2 411 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 C6orf183Q5T699 404 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 FHL5Q5TD97 284 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 NIPAL3Q6P499 406 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 PAMR1Q6UXH9 720 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 RFLNBQ8N5W9 214 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 CLDN22Q8N7P3 220 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ZDHHC1Q8WTX9 485 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 MMABQ96EY8 250 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 C4orf36Q96KX1 117 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ERMAPQ96PL5 475 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 GFM1Q96RP9 751 aaKnown RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 LMF1Q96S06 567 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 TEAD3Q99594 435 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 MAP3K3Q99759 626 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 WACQ9BTA9 647 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 PPIL3Q9H2H8 161 aaKnown RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 SOHLH2Q9NX45 425 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 MRPS7Q9Y2R9 242 aaKnown RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 WDR87Q6ZQQ6 2873 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 A0A1B0GWJ7 208 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 H3BSH0 61 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 POLR1CO15160 346 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 BRINP1O60477 761 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 CLN5O75503 358 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 IGHV4-34P06331 123 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 NGFRP08138 427 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ATF4P18848 351 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 PSG6Q00889 435 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ZNHIT3Q15649 155 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 GLYR1Q49A26 553 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 TP53I3Q53FA7 332 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 KRTCAP3Q53RY4 240 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 TMEM91Q6ZNR0 172 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 MRGPREQ86SM8 312 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 PRSS58Q8IYP2 241 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 C10orf53Q8N6V4 93 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 EFHD2Q96C19 240 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 SENP5Q96HI0 755 aaPredicted RBP8.08□□□□□ -1.12
LINC00558-201ENST00000569422 HDHD2Q9H0R4 259 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ANKRD19PQ9H560 264 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 DUSP22Q9NRW4 184 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 BABAM2Q9NXR7 383 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 LRIT1Q9P2V4 623 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 NLKQ9UBE8 527 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 RPS6KB2Q9UBS0 482 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ERVK-19Q9WJR5 959 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 ADAM18Q9Y3Q7 739 aa8.08□□□□□ -1.12
LINC00558-201ENST00000569422 TRDV1A0A1B0GX56 115 aa8.07□□□□□ -1.12
LINC00558-201ENST00000569422 RIIAD1A6NNX1 92 aa8.07□□□□□ -1.12
LINC00558-201ENST00000569422 GTPBP1O00178 669 aaKnown RBP8.07□□□□□ -1.12
LINC00558-201ENST00000569422 BHLHE40O14503 412 aa8.07□□□□□ -1.12
LINC00558-201ENST00000569422 TNFRSF10CO14798 259 aa8.07□□□□□ -1.12
LINC00558-201ENST00000569422 RNF13O43567 381 aa8.07□□□□□ -1.12
LINC00558-201ENST00000569422 RCBTB2O95199 551 aa8.07□□□□□ -1.12
LINC00558-201ENST00000569422 MGAT2Q10469 447 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms