RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 THEGLP0DJG4 465 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 BMP7P18075 431 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 STOMP27105 288 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 RABIFP47224 123 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 STXBP1P61764 594 aaKnown RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 ZBTB37Q5TC79 503 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 AMIGO1Q86WK6 493 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 NRROSQ86YC3 692 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 TMEFF1Q8IYR6 380 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 GPR135Q8IZ08 494 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 RNF113BQ8IZP6 322 aaKnown RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 LNX2Q8N448 690 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 TMEM99Q8N816 258 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 PHF21AQ96BD5 680 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 HSPA12BQ96MM6 686 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 CD180Q99467 661 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 NDC1Q9BTX1 674 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 TMEM168Q9H0V1 697 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 DPAGT1Q9H3H5 408 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 GHITMQ9H3K2 345 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 EMC7Q9NPA0 242 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 LYARQ9NX58 379 aaKnown RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 SIDT1Q9NXL6 827 aaKnown RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 PTTG3PQ9NZH4 202 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 NTMQ9P121 344 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 WDR45Q9Y484 360 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 THADAQ6YHU6 1953 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 A0A1W2PQ72 361 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 SLC22A31A6NKX4 558 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 BHLHE40O14503 412 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 RASGRP1O95267 797 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 BTCP35070 178 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 TAS2R43P59537 309 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 LTB4RQ15722 352 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 EIPR1Q53HC9 387 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 MFSD12Q6NUT3 480 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 ARL9Q6T311 187 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 IL20RBQ6UXL0 311 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 CEACAM19Q7Z692 300 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 RANBP3LQ86VV4 465 aaPredicted RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 MFSD9Q8NBP5 474 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 OR2L3Q8NG85 312 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 OR10H4Q8NGA5 316 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 FANK1Q8TC84 345 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF431Q8TF32 576 aaPredicted RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 CDS1Q92903 461 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 HS6ST2Q96MM7 605 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 GPR137Q96N19 417 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 MS4A4EQ96PG1 132 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 ABHD1Q96SE0 405 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 TBX5Q99593 518 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 TCEAL2Q9H3H9 227 aaPredicted RBP12.23□□□□□ -0.45
VPS4A-204ENST00000566354 MED20Q9H944 212 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 NUBP2Q9Y5Y2 271 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 FRYLO94915 3013 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 MYO15AQ9UKN7 3530 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 DMDP11532 3685 aa12.23□□□□□ -0.45
VPS4A-204ENST00000566354 TRAPPC13A5PLN9 417 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 FAM86C2PA6NEL3 165 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ADAM11O75078 769 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 FZD7O75084 574 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 SOX30O94993 753 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 EML2O95834 649 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 CD27P26842 260 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF136P52737 540 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 DUSP8Q13202 625 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ARHGAP11BQ3KRB8 267 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 RPL13AP3Q6NVV1 102 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF836Q6ZNA1 936 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 KRT74Q7RTS7 529 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 CADM4Q8NFZ8 388 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 OR8H1Q8NGG4 311 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 OR52E1Q8NGJ3 308 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ABHD4Q8TB40 342 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 SPACA7Q96KW9 195 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 MOGAT1Q96PD6 335 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 PRSS27Q9BQR3 290 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 DPH1Q9BZG8 443 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 NUDT15Q9NV35 164 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF624Q9P2J8 865 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-204ENST00000566354 APOBEC3BQ9UH17 382 aaKnown RBP12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ZNF223Q9UK11 482 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-204ENST00000566354 SPTY2D1-AS1A0A0U1RR47 76 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 ZC3H12DA2A288 527 aaKnown RBP12.22□□□□□ -0.45
VPS4A-204ENST00000566354 OR52A4PA6NMU1 304 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 TNFRSF10CO14798 259 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 RCBTB2O95199 551 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 WNT1P04628 370 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 THBS1P07996 1170 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 CAPZA2P47755 286 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 FNTBP49356 437 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 FXYD6P3P58550 94 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 FZD2Q14332 565 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 SLC36A2Q495M3 483 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 KLHL12Q53G59 568 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 CD276Q5ZPR3 534 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 HDDC2Q7Z4H3 204 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 PXKQ7Z7A4 578 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 LINC00518Q8N0U6 118 aa12.22□□□□□ -0.45
VPS4A-204ENST00000566354 FBXL6Q8N531 539 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms