RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SFXN4Q6P4A7 337 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 ZC3H14Q6PJT7 736 aaKnown RBP12.32□□□□□ -0.44
CLK3-206ENST00000562078 BEND4Q6ZU67 534 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 OR4F15Q8NGB8 312 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 SUSD6Q92537 303 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 FAIM2Q9BWQ8 316 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 ZFP57Q9NU63 452 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 HEATR5BQ9P2D3 2071 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 PRUNE2Q8WUY3 3088 aa12.32□□□□□ -0.44
CLK3-206ENST00000562078 NPIPB8E9PQR5 432 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 UBE2CO00762 179 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 LCMT2O60294 686 aaKnown RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 C1orf105O95561 183 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 EPHX1P07099 455 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 MUC1P15941 1255 aaPredicted RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 CNR1P21554 472 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 TSPAN7P41732 249 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 NPBWR1P48145 328 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 MMP15P51511 669 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 TBPL1P62380 186 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 ALKBH1Q13686 389 aaKnown RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 SMCO1Q147U7 214 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 SLC25A35Q3KQZ1 300 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 GRHL2Q6ISB3 625 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 PGBD2Q6P3X8 592 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 ERN2Q76MJ5 926 aaKnown RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 TMPRSS11BQ86T26 416 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 ZNF547Q8IVP9 402 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 FBXO15Q8NCQ5 510 aaPredicted RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 OR52B4Q8NGK2 314 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 OR5M1Q8NGP8 315 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 OR56A3Q8NH54 315 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 GCDHQ92947 438 aaPredicted RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 NEIL2Q969S2 332 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 IFT27Q9BW83 186 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 EPHX3Q9H6B9 360 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 SGK2Q9HBY8 427 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 FGF20Q9NP95 211 aaPredicted RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 CTPS2Q9NRF8 586 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 VPS29Q9UBQ0 182 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 RCE1Q9Y256 329 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 AP1M2Q9Y6Q5 423 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 HMSDA8MTL9 139 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 SOX1O00570 391 aaPredicted RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 PRAF2O60831 178 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 AQP8O94778 261 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 APODP05090 189 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 PSMB1P20618 241 aaKnown RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 NFYBP25208 207 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 ELAVL4P26378 380 aaKnown RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 MPGP29372 298 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 P2RY2P41231 377 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 MTNR1AP48039 350 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 H2BFSP57053 126 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 LSM11P83369 360 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLK3-206ENST00000562078 CCINQ13939 588 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 C2orf68Q2NKX9 166 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 GLDNQ6ZMI3 551 aaPredicted RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 NUDT18Q6ZVK8 323 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 ZNF765Q7L2R6 523 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 NAA40Q86UY6 237 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 KLBQ86Z14 1044 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 FAM71CQ8NEG0 241 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 ZNF480Q8WV37 535 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 SPRYD4Q8WW59 207 aaPredicted RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 ZDHHC12Q96GR4 267 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 SMAD5Q99717 465 aaKnown RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 KCNK12Q9HB15 430 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 RASL12Q9NYN1 266 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 ASH2LQ9UBL3 628 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 OPN4Q9UHM6 478 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 KCND3Q9UK17 655 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 SH2B3Q9UQQ2 575 aa12.31□□□□□ -0.44
CLK3-206ENST00000562078 EXOSC1Q9Y3B2 195 aaKnown RBP12.31□□□□□ -0.44
CLK3-206ENST00000562078 A0A1B0GW55 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 SERTM1A2A2V5 107 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ANHXE9PGG2 379 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ETHE1O95571 254 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DUX4L2P0CJ85 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DUX4L3P0CJ86 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DUX4L4P0CJ87 422 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DUX4L5P0CJ88 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DUX4L6P0CJ89 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DUX4L7P0CJ90 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 GAAP10253 952 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ZNF8P17098 575 aaPredicted RBP12.3□□□□□ -0.44
CLK3-206ENST00000562078 GDNFP39905 211 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 MAPK9P45984 424 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 MTNR1BP49286 362 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ACSM2AQ08AH3 577 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 CNTN1Q12860 1018 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 KLHL26Q53HC5 615 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 DCST1Q5T197 706 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ACSM2BQ68CK6 577 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 OR7E24Q6IFN5 339 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 PRICKLE2Q7Z3G6 844 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 OR4D9Q8NGE8 314 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 CXorf40AQ8TE69 158 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 FGF11Q92914 225 aa12.3□□□□□ -0.44
CLK3-206ENST00000562078 ART5Q96L15 291 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms