RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 STX3Q13277 289 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 ETFDHQ16134 617 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 NCMAPQ5T1S8 102 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 ANXA8L1Q5VT79 327 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 ABLIM2Q6H8Q1 611 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 HIPK1Q86Z02 1210 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 SLC43A2Q8N370 569 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 ANKFN1Q8N957 763 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 ZNF563Q8TA94 476 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 MGARPQ8TDB4 240 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 SMAP2Q8WU79 429 aaPredicted RBP16.79■□□□□ 0.28
VPS35-202ENST00000561713 ZNF75CPQ92670 426 aaPredicted RBP16.79■□□□□ 0.28
VPS35-202ENST00000561713 FBXW5Q969U6 566 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 GTPBP3Q969Y2 492 aaKnown RBP16.79■□□□□ 0.28
VPS35-202ENST00000561713 SLCO5A1Q9H2Y9 848 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 MEAF6Q9HAF1 191 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 GP6Q9HCN6 339 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 ACER3Q9NUN7 267 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 HAO1Q9UJM8 370 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 LIPT1Q9Y234 373 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 ANK2Q01484 3957 aa16.79■□□□□ 0.28
VPS35-202ENST00000561713 HEATR1Q9H583 2144 aaKnown RBP16.79■□□□□ 0.28
VPS35-202ENST00000561713 SULT2B1O00204 365 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 HMGN4O00479 90 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 TLX2O43763 284 aaPredicted RBP16.78■□□□□ 0.28
VPS35-202ENST00000561713 RAMP1O60894 148 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 GSNP06396 782 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 CD3EP07766 207 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 IGHV1-2P23083 117 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 CLNS1AP54105 237 aaKnown RBP16.78■□□□□ 0.28
VPS35-202ENST00000561713 ITGADQ13349 1161 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 SYPL1Q16563 259 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 Q6ZT83 130 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 TMEM234Q8WY98 164 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 CNOT9Q92600 299 aaKnown RBP16.78■□□□□ 0.28
VPS35-202ENST00000561713 ARL5BQ96KC2 179 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 CCDC106Q9BWC9 280 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 WDR55Q9H6Y2 383 aaPredicted RBP16.78■□□□□ 0.28
VPS35-202ENST00000561713 AIG1Q9NVV5 245 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 NPAP1Q9NZP6 1156 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.78■□□□□ 0.28
VPS35-202ENST00000561713 ALPK2Q86TB3 2170 aa16.78■□□□□ 0.28
VPS35-202ENST00000561713 NDUFS7O75251 213 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 IGHV4-39P01824 125 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 CHRM4P08173 479 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 EPHA3P29320 983 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 FAPQ12884 760 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 TNFAIP8L3Q5GJ75 292 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 COX20Q5RI15 118 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 TMPPEQ6ZT21 453 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 CCDC115Q96NT0 180 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 SERINC1Q9NRX5 453 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 CHRNA9Q9UGM1 479 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 SLC35A3Q9Y2D2 325 aa16.77■□□□□ 0.28
VPS35-202ENST00000561713 DPRXA6NFQ7 191 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 RAD51DO75771 328 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 AGR2O95994 175 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 KITP10721 976 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 COX5AP20674 150 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 WDR4P57081 412 aaKnown RBP16.76■□□□□ 0.27
VPS35-202ENST00000561713 P2RY6Q15077 328 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 DPY19L1Q2PZI1 675 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 ZNF672Q499Z4 452 aaPredicted RBP16.76■□□□□ 0.27
VPS35-202ENST00000561713 HHATQ5VTY9 493 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 OGFOD2Q6N063 350 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 DNM1P46Q6ZS02 220 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 GALNT5Q7Z7M9 940 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 ZNF100Q8IYN0 542 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 VPS37AQ8NEZ2 397 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 SLC25A43Q8WUT9 341 aaPredicted RBP16.76■□□□□ 0.27
VPS35-202ENST00000561713 TMEM158Q8WZ71 300 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 ARL8AQ96BM9 186 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 PANX1Q96RD7 426 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 HDHD5Q9BXW7 423 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 SAP130Q9H0E3 1048 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 SLC38A1Q9H2H9 487 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 ESRP2Q9H6T0 727 aaKnown RBP16.76■□□□□ 0.27
VPS35-202ENST00000561713 POLE3Q9NRF9 147 aa16.76■□□□□ 0.27
VPS35-202ENST00000561713 A0A1W2PR80 420 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 CCDC154A6NI56 674 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 ZNF716A6NP11 495 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 ZNF724A8MTY0 619 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 THBS1P07996 1170 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 PTNP21246 168 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 IDH2P48735 452 aaKnown RBP16.75■□□□□ 0.27
VPS35-202ENST00000561713 CSNK2A1P68400 391 aaPredicted RBP16.75■□□□□ 0.27
VPS35-202ENST00000561713 SPOCK1Q08629 439 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 PPA1Q15181 289 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 PGGHGQ32M88 737 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 GRINAQ7Z429 371 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 CCDC103Q8IW40 242 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 ARFGAP2Q8N6H7 521 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 PIWIL2Q8TC59 973 aaKnown RBP16.75■□□□□ 0.27
VPS35-202ENST00000561713 HSD17B8Q92506 261 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 SLC6A13Q9NSD5 602 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 BTNL2Q9UIR0 455 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 GDF2Q9UK05 429 aaPredicted RBP16.75■□□□□ 0.27
VPS35-202ENST00000561713 RAB21Q9UL25 225 aa16.75■□□□□ 0.27
VPS35-202ENST00000561713 A0A1W2PP18 115 aa16.74■□□□□ 0.27
VPS35-202ENST00000561713 TMEM120BA0PK00 339 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms