RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 NKX1-2Q9UD57 310 aaPredicted RBP10.7□□□□□ -0.7
LDLR-212ENST00000560467 CARD8Q9Y2G2 431 aa10.7□□□□□ -0.7
LDLR-212ENST00000560467 TESMINQ9Y4I5 508 aa10.7□□□□□ -0.7
LDLR-212ENST00000560467 SAC3D1A6NKF1 404 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 CPSF4LA6NMK7 179 aaKnown RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 PEX1O43933 1283 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 FADS1O60427 444 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 CDC40O60508 579 aaKnown RBP eCLIP10.69□□□□□ -0.7
LDLR-212ENST00000560467 OR6B1O95007 311 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 CCNB2O95067 398 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 NADKO95544 446 aaPredicted RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 TNFRSF1BP20333 461 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 FPR1P21462 350 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 PTGS2P35354 604 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 GCKP35557 465 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 HTR3AP46098 478 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ZNF41P51814 821 aaPredicted RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 SUMO3P55854 103 aaPredicted RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 TFF3Q07654 80 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 LRRC36Q1X8D7 754 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 CMPK2Q5EBM0 449 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ENTPD8Q5MY95 495 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 SWT1Q5T5J6 900 aaKnown RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 WBP2NLQ6ICG8 309 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ZNF613Q6PF04 617 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ULK3Q6PHR2 472 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 SHQ1Q6PI26 577 aaKnown RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 STK32CQ86UX6 486 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 TMEM200AQ86VY9 491 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 CCDC71Q8IV32 467 aaPredicted RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 PACRGLQ8N7B6 248 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ATG16L2Q8NAA4 619 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 GATSQ8NAP1 163 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 POGLUT1Q8NBL1 392 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 OR10G3Q8NGC4 313 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 OR52J3Q8NH60 311 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 OR5W2Q8NH69 310 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 DUSP19Q8WTR2 217 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 HS6ST2Q96MM7 605 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ALPK1Q96QP1 1244 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 RBM4BQ9BQ04 359 aaKnown RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 RBM4Q9BWF3 364 aaKnown RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 OSBPL11Q9BXB4 747 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 NMNAT1Q9HAN9 279 aaPredicted RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 DNAJB12Q9NXW2 375 aaKnown RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 TNFRSF10DQ9UBN6 386 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ENOPH1Q9UHY7 261 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 KCNE5Q9UJ90 142 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 RIMS3Q9UJD0 308 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 RNF6Q9Y252 685 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 U3KQV3 271 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ANKHD1Q8IWZ3 2542 aaKnown RBP10.69□□□□□ -0.7
LDLR-212ENST00000560467 ABCA2Q9BZC7 2435 aa10.69□□□□□ -0.7
LDLR-212ENST00000560467 ACANP16112 2415 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 AKAP6Q13023 2319 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 A0A1W2PRQ8 180 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 ANKRD33BA6NCL7 494 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 CLDN24A6NM45 220 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 FAAHO00519 579 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 CASQ2O14958 399 aaPredicted RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 TOXO94900 526 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 DIRAS1O95057 198 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 GKN3PP0CG01 181 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 PNMTP11086 282 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 HSPA13P48723 471 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 IDH2P48735 452 aaKnown RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 P2RX1P51575 399 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 GPR85P60893 370 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 FOXD4Q12950 439 aaPredicted RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 PIN1Q13526 163 aaPredicted RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 DGCR6Q14129 220 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 GANABQ14697 944 aaKnown RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 OR1Q1Q15612 314 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 OTUD3Q5T2D3 398 aaPredicted RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 ZNF730Q6ZMV8 503 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 SULF2Q8IWU5 870 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 OFCC1Q8IZS5 231 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 OR4K17Q8NGC6 315 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 ADAMTS16Q8TE57 1224 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 GIPC3Q8TF64 312 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 HGDQ93099 445 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 SLC41A3Q96GZ6 507 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 SH3YL1Q96HL8 342 aaPredicted RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 MPP4Q96JB8 637 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 Q9H521 79 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 PDP1Q9P0J1 537 aaPredicted RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 B4GALT7Q9UBV7 327 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 CNOT11Q9UKZ1 510 aaKnown RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 OAZ3Q9UMX2 235 aa10.68□□□□□ -0.7
LDLR-212ENST00000560467 KLF13Q9Y2Y9 288 aaPredicted RBP10.68□□□□□ -0.7
LDLR-212ENST00000560467 HTR3EA5X5Y0 456 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 ELOA3DA6NLF2 546 aaPredicted RBP10.67□□□□□ -0.7
LDLR-212ENST00000560467 TMEM229AB2RXF0 380 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 KLRC4-KLRK1H3BQV0 150 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 FRS3O43559 492 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 OR10H3O60404 316 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 ANXA8P13928 327 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 CXCR1P25024 350 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 CHRNB4P30926 498 aa10.67□□□□□ -0.7
LDLR-212ENST00000560467 CASP3P42574 277 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms