RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 SEM1Q6ZVN7 128 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 ASRGL1Q7L266 308 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 ADGRE4PQ86SQ3 457 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 EID3Q8N140 333 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 MEIOBQ8N635 442 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 GEMIN6Q8WXD5 167 aaKnown RBP19.57■□□□□ 0.72
SNX1-210ENST00000560260 LZICQ8WZA0 190 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 ZNF845Q96IR2 970 aaPredicted RBP19.57■□□□□ 0.72
SNX1-210ENST00000560260 DMRTA2Q96SC8 542 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 AMBRA1Q9C0C7 1298 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 MUC13Q9H3R2 512 aa19.57■□□□□ 0.72
SNX1-210ENST00000560260 SAMD4AQ9UPU9 718 aaKnown RBP19.57■□□□□ 0.72
SNX1-210ENST00000560260 A0A1W2PNR3 127 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 CLCA1A8K7I4 914 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 RASSF2P50749 326 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 CDH12P55289 794 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 SYT14P1Q58G82 188 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 RPTNQ6XPR3 784 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 ESPNLQ6ZVH7 1005 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 FJX1Q86VR8 437 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 OR2V1Q8NHB1 315 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 ZPLD1Q8TCW7 415 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 ADAMTS16Q8TE57 1224 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 DNAJA3Q96EY1 480 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 ARL5BQ96KC2 179 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 SRXN1Q9BYN0 137 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 TMEM27Q9HBJ8 222 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 SERINC1Q9NRX5 453 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 CLCF1Q9UBD9 225 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 RPS6KB2Q9UBS0 482 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 SLC7A8Q9UHI5 535 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 PRDM4Q9UKN5 801 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 MEMO1Q9Y316 297 aa19.56■□□□□ 0.72
SNX1-210ENST00000560260 IGKV1D-42A0A075B6H8 117 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 AHRRA9YTQ3 701 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 ADAMDEC1O15204 470 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 LRRTM2O43300 516 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 CXCL13O43927 109 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 SRSF1Q07955 248 aaKnown RBP eCLIP19.55■□□□□ 0.72
SNX1-210ENST00000560260 C4orf17Q53FE4 359 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 ALG10BQ5I7T1 473 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 ZNF613Q6PF04 617 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 WDR88Q6ZMY6 472 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 FKBP9P1Q75LS8 142 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 DHFR2Q86XF0 187 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 OR10D3Q8NH80 312 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 SLC25A43Q8WUT9 341 aaPredicted RBP19.55■□□□□ 0.72
SNX1-210ENST00000560260 TRIB1Q96RU8 372 aa19.55■□□□□ 0.72
SNX1-210ENST00000560260 J3KTA2 159 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 CCL21O00585 134 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 ZNF208O43345 1280 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 GABRA1P14867 456 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 KLK2P20151 261 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 PTNP21246 168 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 CXCR1P25024 350 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 EIF1AXP47813 144 aaKnown RBP19.54■□□□□ 0.72
SNX1-210ENST00000560260 CASP6P55212 293 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 KCNC4Q03721 635 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 EGR4Q05215 589 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 GABPB1Q06547 395 aaPredicted RBP19.54■□□□□ 0.72
SNX1-210ENST00000560260 IQCCQ4KMZ1 466 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 ULK3Q6PHR2 472 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 UTP4Q969X6 686 aaKnown RBP19.54■□□□□ 0.72
SNX1-210ENST00000560260 MCUR1Q96AQ8 359 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 PYURFQ96I23 114 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 C7orf34Q96L11 122 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 OR5B2Q96R09 309 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 C12orf10Q9HB07 376 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 ERRFI1Q9UJM3 462 aaPredicted RBP19.54■□□□□ 0.72
SNX1-210ENST00000560260 A4GNTQ9UNA3 340 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 SPIN1Q9Y657 262 aaPredicted RBP19.54■□□□□ 0.72
SNX1-210ENST00000560260 ARHGAP21Q5T5U3 1957 aa19.54■□□□□ 0.72
SNX1-210ENST00000560260 MYO18BQ8IUG5 2567 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 E9PLN8 166 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 NPIPB7O75200 414 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 IFNW1P05000 195 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 YAP1P46937 504 aaKnown RBP19.53■□□□□ 0.72
SNX1-210ENST00000560260 NUP107P57740 925 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 VLDLRP98155 873 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 PIN1Q13526 163 aaPredicted RBP19.53■□□□□ 0.72
SNX1-210ENST00000560260 NSUN5P2Q63ZY6 315 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 HBMQ6B0K9 141 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 GDF7Q7Z4P5 450 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 DNAJA4Q8WW22 397 aaPredicted RBP19.53■□□□□ 0.72
SNX1-210ENST00000560260 SLC38A4Q969I6 547 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 SLC47A1Q96FL8 570 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 VKORC1Q9BQB6 163 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 PRSS27Q9BQR3 290 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 TTYH2Q9BSA4 534 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 POMPQ9Y244 141 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 PHF3Q92576 2039 aaKnown RBP19.53■□□□□ 0.72
SNX1-210ENST00000560260 TENM4Q6N022 2769 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 MPDZO75970 2070 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 FLNCQ14315 2725 aa19.53■□□□□ 0.72
SNX1-210ENST00000560260 A0A087WUJ7 227 aa19.52■□□□□ 0.72
SNX1-210ENST00000560260 TRAPPC13A5PLN9 417 aa19.52■□□□□ 0.72
SNX1-210ENST00000560260 ELOA3DA6NLF2 546 aaPredicted RBP19.52■□□□□ 0.72
SNX1-210ENST00000560260 GJE1A6NN92 205 aa19.52■□□□□ 0.72
SNX1-210ENST00000560260 FFAR1O14842 300 aa19.52■□□□□ 0.72
SNX1-210ENST00000560260 CHP2O43745 196 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms