RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SLC36A2Q495M3 483 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 ABHD13Q7L211 337 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 RERGQ96A58 199 aaPredicted RBP11.87□□□□□ -0.51
LDLR-207ENST00000558013 DNAJA3Q96EY1 480 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 WDR92Q96MX6 357 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 C1QTNF7Q9BXJ2 289 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 KRCC1Q9NPI7 259 aaPredicted RBP11.87□□□□□ -0.51
LDLR-207ENST00000558013 DUSP22Q9NRW4 184 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 KLHL21Q9UJP4 597 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 TMA7Q9Y2S6 64 aaKnown RBP11.87□□□□□ -0.51
LDLR-207ENST00000558013 A0A0B4J2E0 115 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 A0A1B0GX12 115 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 MCIDASD6RGH6 385 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 TGFBR3LH3BV60 316 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 ANKRD34CP0C6C1 535 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 PEPDP12955 493 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 CXCL3P19876 107 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 AHCYP23526 432 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 TALDO1P37837 337 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 KIR2DS3Q14952 304 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 NTRK2Q16620 822 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 ALG10BQ5I7T1 473 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 OR14A2Q96R54 314 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 SLA2Q9H6Q3 261 aa11.87□□□□□ -0.51
LDLR-207ENST00000558013 TP53BP1Q12888 1972 aaPredicted RBP11.87□□□□□ -0.51
LDLR-207ENST00000558013 ANKRD61A6NGH8 418 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 TNFSF14O43557 240 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SC5DO75845 299 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 OR2B3O76000 313 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 F8A1P23610 371 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 ERP29P30040 261 aaKnown RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 C1orf61Q13536 156 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 NUDT18Q6ZVK8 323 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 RNF113BQ8IZP6 322 aaKnown RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 CA13Q8N1Q1 262 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 FAM98AQ8NCA5 519 aaKnown RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 CAMKVQ8NCB2 501 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 TOR1AIP2Q8NFQ8 470 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SLC22A18Q96BI1 424 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SPACA7Q96KW9 195 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 GSDMCQ9BYG8 508 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 TMEM27Q9HBJ8 222 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SLC23A1Q9UHI7 598 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 IER3IP1Q9Y5U9 82 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 FRYLO94915 3013 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 H3BSH0 61 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 KCNJ13O60928 360 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SOX30O94993 753 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 C1QBP02746 253 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 GAAP10253 952 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 NPR2P20594 1047 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 GIFP27352 417 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 MAP3K8P41279 467 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SRP54P61011 504 aaKnown RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 MAT1AQ00266 395 aaKnown RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 BDH1Q02338 343 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 EXOSC6Q5RKV6 272 aaKnown RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 STPG1Q5TH74 334 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 DMKNQ6E0U4 476 aaPredicted RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 KIRREL2Q6UWL6 708 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 PXKQ7Z7A4 578 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 CSNK1A1LQ8N752 337 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 OR11H7Q8NGC8 314 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 RELTQ969Z4 430 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 PELI1Q96FA3 418 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 MRGPRX1Q96LB2 322 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 DERL3Q96Q80 235 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 LMF1Q96S06 567 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 UBL7Q96S82 380 aaPredicted RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 NMNAT3Q96T66 252 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 ING3Q9NXR8 418 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 HCN3Q9P1Z3 774 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 ST6GALNAC2Q9UJ37 374 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 ADAM30Q9UKF2 790 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SLCO1B1Q9Y6L6 691 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 CENPBD1B2RD01 187 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 CHP2O43745 196 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 SELENOFO60613 162 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 GALR3O60755 368 aaPredicted RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 ZNF3P17036 446 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 DLX2Q07687 328 aaPredicted RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 SIAH3Q8IW03 269 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 GATSQ8NAP1 163 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 THAP4Q8WY91 577 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 ACOT12Q8WYK0 555 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 AKAP1Q92667 903 aaKnown RBP eCLIP11.86□□□□□ -0.511e-6■■■■□ 22.1
LDLR-207ENST00000558013 IRF2BPLQ9H1B7 796 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 BRD7Q9NPI1 651 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 DNAJB12Q9NXW2 375 aaKnown RBP11.86□□□□□ -0.51
LDLR-207ENST00000558013 COPS3Q9UNS2 423 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 CACNG2Q9Y698 323 aa11.86□□□□□ -0.51
LDLR-207ENST00000558013 OR10H2O60403 315 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 ALX3O95076 343 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 PTHLHP12272 177 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 RAB3BP20337 219 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 DRD5P21918 477 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 CFL1P23528 166 aaKnown RBP11.85□□□□□ -0.51
LDLR-207ENST00000558013 PGDP52209 483 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 ATP12AP54707 1039 aa11.85□□□□□ -0.51
LDLR-207ENST00000558013 CEP78Q5JTW2 689 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms