RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 RAB40ALP0C0E4 278 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 CPMP14384 443 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 HOXB3P14651 431 aaPredicted RBP15.02■□□□□ -0
SHMT2-231ENST00000557433 NOS3P29474 1203 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 MECP2P51608 486 aaKnown RBP15.02■□□□□ -0
SHMT2-231ENST00000557433 RPTNQ6XPR3 784 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 OR11G2Q8NGC1 345 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 CEP76Q8TAP6 659 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 LGALS14Q8TCE9 139 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 RAB40AQ8WXH6 277 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 PELI1Q96FA3 418 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 MSANTD3Q96H12 275 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 CCDC120Q96HB5 630 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 LRRC3BQ96PB8 259 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 MYADMQ96S97 322 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 CREBZFQ9NS37 354 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 KCMF1Q9P0J7 381 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 ICAM5Q9UMF0 924 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 PRELID1Q9Y255 219 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 SESN1Q9Y6P5 492 aa15.02■□□□□ -0
SHMT2-231ENST00000557433 OR6C65A6NJZ3 312 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 HIDE1A8MVS5 230 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 G3V3Q6 166 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 AIPO00170 330 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 PCDH8O95206 1070 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 PPP1R3DO95685 299 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 LDOC1O95751 146 aaPredicted RBP15.02□□□□□ -0.01
SHMT2-231ENST00000557433 HPXP02790 462 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 SLC35G6P0C7Q6 338 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 IFNGR1P15260 489 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 PEBP1P30086 187 aaKnown RBP15.02□□□□□ -0.01
SHMT2-231ENST00000557433 ERVFC1P60507 584 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 TSPAN5P62079 268 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 OPCMLQ14982 345 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 ZSWIM7Q19AV6 140 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 SLC35D3Q5M8T2 416 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 FHL5Q5TD97 284 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 COX18Q8N8Q8 333 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 OR4D9Q8NGE8 314 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 COL26A1Q96A83 441 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 C6orf106Q9H6K1 298 aaPredicted RBP15.02□□□□□ -0.01
SHMT2-231ENST00000557433 SLC17A4Q9Y2C5 497 aa15.02□□□□□ -0.01
SHMT2-231ENST00000557433 MRPS23Q9Y3D9 190 aaKnown RBP15.02□□□□□ -0.01
SHMT2-231ENST00000557433 NOTCH4Q99466 2003 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 A0A0B4J2E0 115 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 A0A1B0GX12 115 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 TFP02787 698 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 ZNF888P0CJ79 500 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-231ENST00000557433 SMIM10L1P0DMW3 83 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 ZNF250P15622 560 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 FUT1P19526 365 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 ZP3P21754 424 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 DRD5P21918 477 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 ENPP1P22413 925 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 SSTR2P30874 369 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 VSX2P58304 361 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-231ENST00000557433 IRF4Q15306 451 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 GAB4Q2WGN9 574 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 TCTE1Q5JU00 501 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 FAM198BQ6UWH4 519 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 GLDNQ6ZMI3 551 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-231ENST00000557433 LINGO2Q7L985 606 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 PRSS42Q7Z5A4 293 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 GRASPQ7Z6J2 395 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-231ENST00000557433 CMTM4Q8IZR5 234 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 BEST4Q8NFU0 473 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 RPS4Y2Q8TD47 263 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 FCAMRQ8WWV6 532 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 NSMAFQ92636 917 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 SLC22A18Q96BI1 424 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 PEX11GQ96HA9 241 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 SMIM10Q96HG1 83 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 ZNF578Q96N58 590 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-231ENST00000557433 ZNF426Q9BUY5 554 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 RBCK1Q9BYM8 510 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 CD93Q9NPY3 652 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 MBNL1Q9NR56 388 aaKnown RBP15.01□□□□□ -0.01
SHMT2-231ENST00000557433 TAS2R5Q9NYW4 299 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 KCNK6Q9Y257 313 aa15.01□□□□□ -0.01
SHMT2-231ENST00000557433 TRBV2A0A0J9YWF9 115 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 CENPVL1A0A0U1RR11 272 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 hCG_1807616A0A1W2PRN6 198 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 PLSCR5A0PG75 271 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 GXYLT2A0PJZ3 443 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 IFITM5A6NNB3 132 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 B3GALT2O43825 422 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 GKN3PP0CG01 181 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 CALCBP10092 127 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 PTGS2P35354 604 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 CLDN2P57739 230 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 RPS11P62280 158 aaKnown RBP eCLIP15□□□□□ -0.01
SHMT2-231ENST00000557433 MESP2Q0VG99 397 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 RNASE12Q5GAN4 147 aaKnown RBP15□□□□□ -0.01
SHMT2-231ENST00000557433 NHLRC3Q5JS37 347 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 C3P1Q6ZMU1 363 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 VN1R4Q7Z5H5 301 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 GRAMD2AQ8IUY3 354 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 SLC35F2Q8IXU6 374 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 GALNT11Q8NCW6 608 aa15□□□□□ -0.01
SHMT2-231ENST00000557433 OR13C5Q8NGS8 318 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms