RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 OR52R1Q8NGF1 315 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 ADAMTS16Q8TE57 1224 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 PAQR8Q8TEZ7 354 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 DIO2Q92813 273 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 SLC35G5Q96KT7 338 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 BBS4Q96RK4 519 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 NXF5Q9H1B4 397 aaKnown RBP11.31□□□□□ -0.6
SHMT2-230ENST00000557427 LDAHQ9H6V9 325 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 EXO5Q9H790 373 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 PROK2Q9HC23 129 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 SH2D2AQ9NP31 389 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 GIMAP4Q9NUV9 329 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 CNIH4Q9P003 139 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 SAMHD1Q9Y3Z3 626 aaKnown RBP11.31□□□□□ -0.6
SHMT2-230ENST00000557427 PCDHGB3Q9Y5G1 929 aa11.31□□□□□ -0.6
SHMT2-230ENST00000557427 CHCHD2Q9Y6H1 151 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-230ENST00000557427 DVL2O14641 736 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 ADAMDEC1O15204 470 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 SUSD5O60279 629 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 CBX7O95931 251 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 IFNA2P01563 188 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 TFPTP0C1Z6 253 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 RFPL3SP0C7P2 107 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 ATP6V1B1P15313 513 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 CDH2P19022 906 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-230ENST00000557427 AQP1P29972 269 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 SOX18P35713 384 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 MAN2A2P49641 1150 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF136P52737 540 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 CASP9P55211 416 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 NTRK2Q16620 822 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 KRTAP24-1Q3LI83 254 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 BICRALQ6AI39 1079 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 KDM4DQ6B0I6 523 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 DESI1Q6ICB0 168 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 FAHD1Q6P587 224 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 BHLHB9Q6PI77 547 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 THAP5Q7Z6K1 395 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 SATL1Q86VE3 508 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 DND1Q8IYX4 353 aaKnown RBP11.3□□□□□ -0.6
SHMT2-230ENST00000557427 OFCC1Q8IZS5 231 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 C8orf59Q8N0T1 100 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-230ENST00000557427 OR9A2Q8NGT5 310 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 SPPL2AQ8TCT8 520 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 GEMIN6Q8WXD5 167 aaKnown RBP11.3□□□□□ -0.6
SHMT2-230ENST00000557427 PIGTQ969N2 578 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 MUS81Q96NY9 551 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF300Q96RE9 604 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-230ENST00000557427 ITPAQ9BY32 194 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 AMBRA1Q9C0C7 1298 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 ZFP64Q9NPA5 681 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 CFL2Q9Y281 166 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 U3KQV3 271 aa11.3□□□□□ -0.6
SHMT2-230ENST00000557427 LOC100130705A0A1B0GUX0 176 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 C2orf72A6NCS6 295 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 TMEM247A6NEH6 219 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 C5orf58C9J3I9 102 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 HAX1O00165 279 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 HMGN4O00479 90 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 UGT2B11O75310 529 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 CLIC3O95833 236 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 OPN1SWP03999 348 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 GABRA1P14867 456 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 PRKACGP22612 351 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 IGFBP5P24593 272 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 ABCD3P28288 659 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 MPIP34949 423 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 GPC1P35052 558 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 KHKP50053 298 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 NCBP2P52298 156 aaKnown RBP eCLIP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 AGFG1P52594 562 aaKnown RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 SORDQ00796 357 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 PPP1R8Q12972 351 aaKnown RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 TOP3AQ13472 1001 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF628Q5EBL2 1059 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 RBM48Q5RL73 367 aaKnown RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF691Q5VV52 312 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 HEPHL1Q6MZM0 1159 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 TSEN54Q7Z6J9 526 aaKnown RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 KIF18BQ86Y91 864 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 SAMD14Q8IZD0 417 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 PIK3C3Q8NEB9 887 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 OR56A1Q8NGH5 318 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 MIPOL1Q8TD10 442 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 SLC38A5Q8WUX1 472 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 SMPDL3BQ92485 455 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 HDAC2Q92769 488 aaKnown RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 SARAFQ96BY9 339 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 CTHRC1Q96CG8 243 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 DGCR14Q96DF8 476 aaKnown RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 LRRC46Q96FV0 321 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 LCORQ96JN0 433 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 GRIP2Q9C0E4 1043 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 DDX18Q9NVP1 670 aaKnown RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 NDUFAF4Q9P032 175 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 PDP1Q9P0J1 537 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 ZNF629Q9UEG4 869 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 PRODH2Q9UF12 536 aa11.29□□□□□ -0.6
SHMT2-230ENST00000557427 BOKQ9UMX3 212 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-230ENST00000557427 HSPE1-MOB4S4R3N1 261 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms