RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	MED11	Q9P086	117 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	C11orf21	Q9P2W6	132 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZNF639	Q9UID6	485 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	DKKL1	Q9UK85	242 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	ITGB1BP2	Q9UKP3	347 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	CORO2B	Q9UQ03	480 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	CAMK2A	Q9UQM7	478 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	RPH3A	Q9Y2J0	694 aa	Predicted RBP	4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	SLC6A5	Q9Y345	797 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	FREM1	Q5H8C1	2179 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	BAHCC1	Q9P281	2608 aa		4.23	□□□□□ -1.73
ATXN3-238	ENST00000556288	KALRN	O60229	2985 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	NCOA6	Q14686	2063 aa	Predicted RBP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288		A0A087WV62	115 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	NPIPA5	A0A0B4J1W7	369 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	LOC102723971	A0A1B0GUV8	181 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	PRSS51	A0A1B0GVH4	220 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR6C70	A6NIJ9	312 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	NPIPA7	E9PJI5	369 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	PLOD2	O00469	737 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	NR5A2	O00482	541 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	KLF11	O14901	512 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SLC19A2	O60779	497 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	CBR3	O75828	277 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SNX4	O95219	450 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	UTS2	O95399	124 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OPN1LW	P04000	364 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ALDOC	P09972	364 aa	Known RBP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	NPIPA8	P0DM63	369 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	CT45A8	P0DMV1	189 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	CT45A9	P0DMV2	189 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR12D1	P0DN82	309 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	TROVE2	P10155	538 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ACP2	P11117	423 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	IDO1	P14902	403 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	NAGA	P17050	411 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	UQCRC2	P22695	453 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	CRAT	P43155	626 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	STAR	P49675	285 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	PNLIPRP2	P54317	469 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	HBA1	P69905	142 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	PSG6	Q00889	435 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	PMPCA	Q10713	525 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	INA	Q16352	499 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	C3AR1	Q16581	482 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	DUSP5	Q16690	384 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	GSTA3	Q16772	222 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SMU1	Q2TAY7	513 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	GRAMD1B	Q3KR37	738 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZIK1	Q3SY52	487 aa	Predicted RBP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	GXYLT1	Q4G148	440 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	EIPR1	Q53HC9	387 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	CT45A2	Q5DJT8	189 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	PLAC9	Q5JTB6	97 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SPANXN4	Q5MJ08	99 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	C6orf10	Q5SRN2	563 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ATAD3B	Q5T9A4	648 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	WLS	Q5T9L3	541 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	CDC73	Q6P1J9	531 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	TNFAIP8L2	Q6P589	184 aa	Predicted RBP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	BHLHB9	Q6PI77	547 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	NPSR1	Q6W5P4	371 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	RGS9BP	Q6ZS82	235 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	RNF165	Q6ZSG1	346 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OLIG3	Q7RTU3	272 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	MAVS	Q7Z434	540 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	HMGN2P46	Q86SG4	172 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	DOLPP1	Q86YN1	238 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	RIMKLA	Q8IXN7	391 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	UBQLNL	Q8IYU4	475 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	TMCO5A	Q8N6Q1	288 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZNF441	Q8N8Z8	693 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	CDRT4	Q8N9R6	151 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZFP62	Q8NB50	900 aa	Predicted RBP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ATP6V1C2	Q8NEY4	427 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR5D16	Q8NGK9	328 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR5M1	Q8NGP8	315 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	PAQR8	Q8TEZ7	354 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SSC4D	Q8WTU2	575 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SMPDL3B	Q92485	455 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	RAB8B	Q92930	207 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	VPS33A	Q96AX1	596 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	MOAP1	Q96BY2	351 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ZG16B	Q96DA0	208 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ERP27	Q96DN0	273 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	FAM120B	Q96EK7	910 aa	Known RBP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SH3YL1	Q96HL8	342 aa	Predicted RBP	4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	FCRL1	Q96LA6	429 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	TEX37	Q96LM6	180 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	VSTM2L	Q96N03	204 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	MS4A4E	Q96PG1	132 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR7D2	Q96RA2	312 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	EBF4	Q9BQW3	602 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	SLC35A5	Q9BS91	424 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OSBPL11	Q9BXB4	747 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	ANGPTL4	Q9BY76	406 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	FAM107B	Q9H098	131 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	OR51I1	Q9H343	314 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	RMND5A	Q9H871	391 aa		4.22	□□□□□ -1.73
ATXN3-238	ENST00000556288	TRIM45	Q9H8W5	580 aa	Predicted RBP	4.22	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms