RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 TMPPEQ6ZT21 453 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 C22orf34Q6ZV56 151 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 GTF2IRD2Q86UP8 949 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 CDC20BQ86Y33 519 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 NFKBIDQ8NI38 313 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 BBS10Q8TAM1 723 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 PSD2Q9BQI7 771 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 LIME1Q9H400 295 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.26■□□□□ 0.51
VTI1B-205ENST00000555543 LEF1Q9UJU2 399 aaPredicted RBP18.26■□□□□ 0.51
VTI1B-205ENST00000555543 TMED7Q9Y3B3 224 aa18.26■□□□□ 0.51
VTI1B-205ENST00000555543 SPIN1Q9Y657 262 aaPredicted RBP18.26■□□□□ 0.51
VTI1B-205ENST00000555543 TMEM72A0PK05 275 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 ENO4A6NNW6 628 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 C16orf97H3BN30 126 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 SULT2B1O00204 365 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 PRKD3O94806 890 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 PGM3O95394 542 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 PPIBP23284 216 aaKnown RBP18.25■□□□□ 0.51
VTI1B-205ENST00000555543 TACR3P29371 465 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 SLC1A3P43003 542 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 HTR3AP46098 478 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 LARS2Q15031 903 aaKnown RBP18.25■□□□□ 0.51
VTI1B-205ENST00000555543 POU4F3Q15319 338 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 TFAP2EQ6VUC0 442 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 ZNF550Q7Z398 422 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 DHDDSQ86SQ9 333 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 ZNF440Q8IYI8 595 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 SLC43A2Q8N370 569 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 SPATA9Q9BWV2 254 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 NDRG3Q9UGV2 375 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 ITGB1BP2Q9UKP3 347 aa18.25■□□□□ 0.51
VTI1B-205ENST00000555543 A0A1W2PPR1 153 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 SIAH2O43255 324 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 FRS3O43559 492 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 CYTIPO60759 359 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 HRGP04196 525 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 TROVE2P10155 538 aaKnown RBP eCLIP18.24■□□□□ 0.51
VTI1B-205ENST00000555543 GPX2P18283 190 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 DNAJA1P31689 397 aaKnown RBP18.24■□□□□ 0.51
VTI1B-205ENST00000555543 POLR2HP52434 150 aaKnown RBP18.24■□□□□ 0.51
VTI1B-205ENST00000555543 ADRM1Q16186 407 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 ZNF311Q5JNZ3 666 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 TMEM201Q5SNT2 666 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 METTL21CQ5VZV1 264 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 ANKRD34AQ69YU3 496 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 ABLIM2Q6H8Q1 611 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 STAC2Q6ZMT1 411 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 SERPINA11Q86U17 422 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 DPP10Q8N608 796 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 ZNF300Q96RE9 604 aaPredicted RBP18.24■□□□□ 0.51
VTI1B-205ENST00000555543 KLHL4Q9C0H6 718 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 ADAM19Q9H013 955 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 BCO1Q9HAY6 547 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 GP6Q9HCN6 339 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 KLHL9Q9P2J3 617 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 IFT52Q9Y366 437 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 NDUFAF1Q9Y375 327 aa18.24■□□□□ 0.51
VTI1B-205ENST00000555543 ZC3H12DA2A288 527 aaKnown RBP18.23■□□□□ 0.51
VTI1B-205ENST00000555543 C5orf58C9J3I9 102 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 ANGPT2O15123 496 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 PMS2P2O95744 297 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 YES1P07947 543 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 VIMP08670 466 aaKnown RBP18.23■□□□□ 0.51
VTI1B-205ENST00000555543 EDNRAP25101 427 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 CSNK2A1P68400 391 aaPredicted RBP18.23■□□□□ 0.51
VTI1B-205ENST00000555543 CDK6Q00534 326 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 RASGEF1BQ0VAM2 473 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 SELPLGQ14242 412 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 HSP90B2PQ58FF3 399 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 RUNDC3AQ59EK9 446 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 COMTD1Q86VU5 262 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 MED18Q9BUE0 208 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 CCDC134Q9H6E4 229 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 MED4Q9NPJ6 270 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 HDGFL3Q9Y3E1 203 aa18.23■□□□□ 0.51
VTI1B-205ENST00000555543 ZNF814B7Z6K7 855 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 IMPDH2P12268 514 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 UQCRBP14927 111 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 ETS2P15036 469 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 MTPNP58546 118 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 HOXC5Q00444 222 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 FBXW10Q5XX13 1052 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 REEP3Q6NUK4 255 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 BEND4Q6ZU67 534 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 STK32CQ86UX6 486 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 CADM2Q8N3J6 435 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 TSPEARQ8WU66 669 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 ZNF775Q96BV0 537 aaPredicted RBP18.22■□□□□ 0.51
VTI1B-205ENST00000555543 ZC3HAV1LQ96H79 300 aaKnown RBP18.22■□□□□ 0.51
VTI1B-205ENST00000555543 ANKRD27Q96NW4 1050 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 CGREF1Q99674 301 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 TMEM38AQ9H6F2 299 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 CACYBPQ9HB71 228 aaKnown RBP18.22■□□□□ 0.51
VTI1B-205ENST00000555543 C6orf203Q9P0P8 240 aaPredicted RBP18.22■□□□□ 0.51
VTI1B-205ENST00000555543 ZNF232Q9UNY5 417 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 CORO2BQ9UQ03 480 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 FREM1Q5H8C1 2179 aa18.22■□□□□ 0.51
VTI1B-205ENST00000555543 DEFB108AA8MXU0 73 aa18.21■□□□□ 0.51
VTI1B-205ENST00000555543 EVPLLA8MZ36 301 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms