RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 RFWD3Q6PCD5 774 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 TMEM220Q6QAJ8 160 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 LRRTM1Q86UE6 522 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 MARCH9Q86YJ5 346 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 HPS6Q86YV9 775 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 GABRG1Q8N1C3 465 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 ZNF614Q8N883 585 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 OR4F6Q8NGB9 312 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 NPRL2Q8WTW4 380 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 GLYATL2Q8WU03 294 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 HTR3CQ8WXA8 447 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 PRRC1Q96M27 445 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 CYP2S1Q96SQ9 504 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 MBOAT4Q96T53 435 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 RNF2Q99496 336 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 ATF6BQ99941 703 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 BLZF1Q9H2G9 400 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 REEP4Q9H6H4 257 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 PAK1IP1Q9NWT1 392 aaPredicted RBP4.69□□□□□ -1.66
SCFD1-208ENST00000553278 WARS2Q9UGM6 360 aaKnown RBP4.69□□□□□ -1.66
SCFD1-208ENST00000553278 ERVW-1Q9UQF0 538 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 L3MBTL1Q9Y468 752 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 N6AMT1Q9Y5N5 214 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 USP16Q9Y5T5 823 aa4.69□□□□□ -1.66
SCFD1-208ENST00000553278 IGLV7-46A0A075B6I9 117 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 TCRBV9S1A1TA0A576 114 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 ERVV-2B6SEH9 535 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 E9PLD3 99 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 IDH3BO43837 385 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 POP4O95707 220 aaKnown RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 GNA14O95837 355 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 CCNB1P14635 433 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 PRKACAP17612 351 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 OXTRP30559 389 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 OPRD1P41143 372 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 LEPP41159 167 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 XCR1P46094 333 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 RPS5P46782 204 aaKnown RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 OR1D4P47884 311 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 HNRNPA3P51991 378 aaKnown RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 RIPK4P57078 832 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 C17orf58Q2M2W7 97 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 EIPR1Q53HC9 387 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 CCDC137Q6PK04 289 aaKnown RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 LRRC49Q8IUZ0 686 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 NUDCD3Q8IVD9 361 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 MFSD6LQ8IWD5 586 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 CSNK1A1LQ8N752 337 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 CATSPER1Q8NEC5 780 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 BBS1Q8NFJ9 593 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 OR52H1Q8NGJ2 320 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 OR13F1Q8NGS4 319 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 GPR151Q8TDV0 419 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 ACMSDQ8TDX5 336 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 ADAMTS16Q8TE57 1224 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 TFB1MQ8WVM0 346 aaKnown RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 FBXO17Q96EF6 278 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 PPP1R16AQ96I34 528 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 SLC45A3Q96JT2 553 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 TM2D1Q9BX74 207 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 OPN3Q9H1Y3 402 aaPredicted RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 TDRD3Q9H7E2 651 aaKnown RBP4.68□□□□□ -1.66
SCFD1-208ENST00000553278 TIGARQ9NQ88 270 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 CFAP45Q9UL16 551 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 TRAF3IP3Q9Y228 551 aa4.68□□□□□ -1.66
SCFD1-208ENST00000553278 INSRP06213 1382 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 A0A087X002 238 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 G3V3Y1 287 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 M0QX08 132 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 SULT2B1O00204 365 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 NR5A2O00482 541 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 DLGAP1O14490 977 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 TRDMT1O14717 391 aaKnown RBP4.67□□□□□ -1.66
SCFD1-208ENST00000553278 FLOT1O75955 427 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 OR2J3O76001 311 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 SEMA4FO95754 770 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 AMBPP02760 352 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 MSR1P21757 451 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 BMI1P35226 326 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 ALDH3B2P48448 385 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 LIM2P55344 173 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 PKNOX1P55347 436 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 ABRAXAS2Q15018 415 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 DUSP7Q16829 419 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 HIKESHIQ53FT3 197 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 AGBL2Q5U5Z8 902 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 TWF2Q6IBS0 349 aaKnown RBP4.67□□□□□ -1.66
SCFD1-208ENST00000553278 TMUB2Q71RG4 321 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 NOTCH2NLQ7Z3S9 236 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 MCOLN2Q8IZK6 566 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 NRGNQ92686 78 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 STMN2Q93045 179 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 MS4A14Q96JA4 679 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 PGLYRP2Q96PD5 576 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 SIKE1Q9BRV8 207 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 CHCHD5Q9BSY4 110 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 RGCCQ9H4X1 137 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 JPT2Q9H910 190 aa4.67□□□□□ -1.66
SCFD1-208ENST00000553278 CYP3A43Q9HB55 503 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms