RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TNFRSF10CO14798 259 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 FUCA1P04066 466 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 GTF2F2P13984 249 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 PLGLB1Q02325 96 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 TFF2Q03403 129 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 SCRN3Q0VDG4 424 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 ZNF322Q6U7Q0 402 aaPredicted RBP13.9□□□□□ -0.18
CUX1-214ENST00000550008 TMEM92Q6UXU6 159 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 CEP76Q8TAP6 659 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 PMM1Q92871 262 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 PITX2Q99697 317 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 TESQ9UGI8 421 aaKnown RBP13.9□□□□□ -0.18
CUX1-214ENST00000550008 BAIAP2Q9UQB8 552 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 LYRM1O43325 122 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 PTTG1O95997 202 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 SLC35E2P0CK97 266 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 LYSMD4Q5XG99 296 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 FAHD1Q6P587 224 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 ZNF595Q8IYB9 648 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 TP53I13Q8NBR0 393 aaPredicted RBP13.9□□□□□ -0.18
CUX1-214ENST00000550008 OR5AK2Q8NH90 309 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 ADAMTS18Q8TE60 1221 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 NPRL2Q8WTW4 380 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 RASD2Q96D21 266 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 RNF121Q9H920 327 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 PRDM7Q9NQW5 492 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 NUDT15Q9NV35 164 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 ADAM18Q9Y3Q7 739 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 LCTP09848 1927 aa13.9□□□□□ -0.18
CUX1-214ENST00000550008 TSPAN11A1L157 253 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 C5orf51A6NDU8 294 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 SERINC4A6NH21 518 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 KDM4EB2RXH2 506 aaPredicted RBP13.9□□□□□ -0.19
CUX1-214ENST00000550008 TP53I11O14683 189 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 CELA2BP08218 269 aaPredicted RBP13.9□□□□□ -0.19
CUX1-214ENST00000550008 RPS27P42677 84 aaKnown RBP13.9□□□□□ -0.19
CUX1-214ENST00000550008 PRPS1P60891 318 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 PRAMEF20Q5VT98 475 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 OR7E24Q6IFN5 339 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 SFTPA2Q8IWL1 248 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 HLA-CQ95604 372 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 Q96M85 177 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 HOXD1Q9GZZ0 328 aa13.9□□□□□ -0.19
CUX1-214ENST00000550008 RTTNQ86VV8 2226 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 ZAR1LA6NP61 321 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 ZNF264O43296 627 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 SCG5P05408 212 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 RIDAP52758 137 aaKnown RBP13.89□□□□□ -0.19
CUX1-214ENST00000550008 SRSF5Q13243 272 aaKnown RBP13.89□□□□□ -0.19
CUX1-214ENST00000550008 SLC25A24Q6NUK1 477 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 NLRP8Q86W28 1048 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 BEST4Q8NFU0 473 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 ZNF431Q8TF32 576 aaPredicted RBP13.89□□□□□ -0.19
CUX1-214ENST00000550008 FCAMRQ8WWV6 532 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 OR5B2Q96R09 309 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 CCDC32Q9BV29 185 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 OR10A4Q9H209 315 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 SUSD2Q9UGT4 822 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 GPX5O75715 221 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 IL7P13232 177 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 NID1P14543 1247 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 CD1CP29017 333 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 FXYD6P3P58550 94 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 USP51Q70EK9 711 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 GPR32P1Q8NGA4 272 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 GHSRQ92847 366 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 METTL21EPA6NDL7 271 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 TSPAN4O14817 238 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 RBBP9O75884 186 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 ZNF81P51508 661 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 FGL2Q14314 439 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 C8orf82Q6P1X6 216 aaPredicted RBP13.89□□□□□ -0.19
CUX1-214ENST00000550008 BTLAQ7Z6A9 289 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 CELF2-AS1Q8N7Q2 184 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 OR4N2Q8NGD1 307 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 SLC38A1Q9H2H9 487 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 C19orf53Q9UNZ5 99 aaPredicted RBP13.89□□□□□ -0.19
CUX1-214ENST00000550008 KLK4Q9Y5K2 254 aa13.89□□□□□ -0.19
CUX1-214ENST00000550008 CDHR4A6H8M9 788 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 ZNF878C9JN71 531 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 CTNSO60931 367 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 PAHP00439 452 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 SNRPBP14678 240 aaKnown RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 ACY1Q03154 408 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 RASGEF1BQ0VAM2 473 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 AGERQ15109 404 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 QSOX2Q6ZRP7 698 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 DPY19L4Q7Z388 723 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 OR5L2Q8NGL0 311 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 BAHD1Q8TBE0 780 aaPredicted RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 ASB15Q8WXK1 588 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 TSLPQ969D9 159 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 PLA2G12AQ9BZM1 189 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 CPNE5Q9HCH3 593 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 MRPS2Q9Y399 296 aaKnown RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 PTRH2Q9Y3E5 179 aaKnown RBP13.88□□□□□ -0.19
CUX1-214ENST00000550008 TRAV18A0A075B6X5 111 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 P2RX6O15547 441 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 EML2O95834 649 aa13.88□□□□□ -0.19
CUX1-214ENST00000550008 PNMTP11086 282 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms