RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 GTPBP8Q8N3Z3 284 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ICA1LQ8NDH6 482 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 MPP4Q96JB8 637 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ZNF426Q9BUY5 554 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OR2B2Q9GZK3 357 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 C12orf10Q9HB07 376 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 MRPS18CQ9Y3D5 142 aaKnown RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 MAGED1Q9Y5V3 778 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 EML6Q6ZMW3 1958 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMED7-TICAM2A0A0A6YYA0 188 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 C7orf72A4D263 438 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SAC3D1A6NKF1 404 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ELOA3DA6NLF2 546 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 EFNA2O43921 213 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 HPNP05981 417 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PNMTP11086 282 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 CCNA2P20248 432 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 IL11P20809 199 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FPR1P21462 350 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ADH6P28332 368 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 HTR3AP46098 478 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ELOA3BQ3SY89 546 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 GLYR1Q49A26 553 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 WIPI1Q5MNZ9 446 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 DCST1Q5T197 706 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 RAET1LQ5VY80 246 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ELOA3Q8NG57 546 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OR5K1Q8NHB7 308 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OR14L1PQ8NHC6 308 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TAAR6Q96RI8 345 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 QPCTLQ9NXS2 382 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OAZ3Q9UMX2 235 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMED7Q9Y3B3 224 aa17.11■□□□□ 0.33
TNFRSF1A-213ENST00000540022 NINQ8N4C6 2090 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 IGKV1D-42A0A075B6H8 117 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SH3PXD2BA1X283 911 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OR2M5A3KFT3 312 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 J3QKU1 62 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ACOT7O00154 380 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ZNF23P17027 643 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 CXCR1P25024 350 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 APOBEC1P41238 236 aaKnown RBP17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 EIF1P41567 113 aaKnown RBP17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 B3GALT5-AS1P59052 145 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 RPUSD3Q6P087 351 aaKnown RBP17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 EPHX4Q8IUS5 362 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 FAM109AQ8N4B1 249 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ACOT11Q8WXI4 607 aaPredicted RBP17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 DTNBP1Q96EV8 351 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMCC3Q9ULS5 477 aa17.1■□□□□ 0.33
TNFRSF1A-213ENST00000540022 HEATR5AQ86XA9 2040 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMEM72A0PK05 275 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SUSD5O60279 629 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ZNF24P17028 368 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PRKACGP22612 351 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 UGT2B15P54855 530 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 GK3PQ14409 553 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TRIP10Q15642 601 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 MICAQ29983 383 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 SHQ1Q6PI26 577 aaKnown RBP17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ZNF730Q6ZMV8 503 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 P3H2Q8IVL5 708 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 Q8NA96 180 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 OR4K5Q8NGD3 323 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 TMEM239Q8WW34 195 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 PNPLA2Q96AD5 504 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 CIB1Q99828 191 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 ZDHHC11Q9H8X9 412 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 CHRNA9Q9UGM1 479 aa17.09■□□□□ 0.33
TNFRSF1A-213ENST00000540022 G3V2T6 193 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PYCARD-AS1I3L0S3 204 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PIP5K1CO60331 668 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZNF17P17021 662 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 RBM34P42696 430 aaKnown RBP17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 EGR4Q05215 589 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SLC10A1Q14973 349 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 LPCAT4Q643R3 524 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TTC33Q6PID6 262 aaPredicted RBP17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZDHHC13Q8IUH4 622 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OR9Q2Q8NGE9 314 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 GIPC3Q8TF64 312 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 NRBF2Q96F24 287 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 HS6ST2Q96MM7 605 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PIGQQ9BRB3 760 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 DEFB127Q9H1M4 99 aa17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 MEPEQ9NQ76 525 aaPredicted RBP17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PDP1Q9P0J1 537 aaPredicted RBP17.08■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZC3H12DA2A288 527 aaKnown RBP17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PDLIM1O00151 329 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 KPNA4O00629 521 aaPredicted RBP17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TFECO14948 347 aaPredicted RBP17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CASQ2O14958 399 aaPredicted RBP17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CCNB2O95067 398 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PEPDP12955 493 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ARHGDIAP52565 204 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 INAQ16352 499 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ANKRD34AQ69YU3 496 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZNF770Q6IQ21 691 aaPredicted RBP17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 MBOAT2Q6ZWT7 520 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 STK32CQ86UX6 486 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms