RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 PEX5LQ8IYB4 626 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 TMEM171Q8WVE6 324 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 WDR60Q8WVS4 1066 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 PMM1Q92871 262 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 DNAJA3Q96EY1 480 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 MAELQ96JY0 434 aaKnown RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 ESRP2Q9H6T0 727 aaKnown RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 RMND5AQ9H871 391 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 ZIM2Q9NZV7 527 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 PRSS50Q9UI38 385 aa13.7□□□□□ -0.22
CPSF1-211ENST00000533492 ING1Q9UK53 422 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 ZNF469Q96JG9 3925 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-211ENST00000533492 HS3ST1O14792 307 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 PMS2P2O95744 297 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 CD3EP07766 207 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 INHBBP09529 407 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 CRATP43155 626 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 MAGEA8P43361 318 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 OR2B6P58173 313 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 TAB1Q15750 504 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 PRSS57Q6UWY2 283 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.69□□□□□ -0.22
CPSF1-211ENST00000533492 YTHDF3Q7Z739 585 aaKnown RBP13.69□□□□□ -0.22
CPSF1-211ENST00000533492 AKAP1Q92667 903 aaKnown RBP eCLIP13.69□□□□□ -0.22
CPSF1-211ENST00000533492 ZNF75CPQ92670 426 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-211ENST00000533492 ITCHQ96J02 903 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 ARL5BQ96KC2 179 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 POTEKPQ9BYX7 375 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 OR11A1Q9GZK7 315 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 CALML5Q9NZT1 146 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 TMEM181Q9P2C4 612 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 P2RX2Q9UBL9 471 aa13.69□□□□□ -0.22
CPSF1-211ENST00000533492 NOSIPQ9Y314 301 aaKnown RBP13.69□□□□□ -0.22
CPSF1-211ENST00000533492 TMED7-TICAM2A0A0A6YYA0 188 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 TMEM247A6NEH6 219 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 CFAP73A6NFT4 308 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 AP3D1O14617 1153 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 GPR171O14626 319 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 KLF11O14901 512 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 CLOCKO15516 846 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 DNPH1O43598 174 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 LYZL6O75951 148 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 POLR2HP52434 150 aaKnown RBP13.68□□□□□ -0.22
CPSF1-211ENST00000533492 POLR2JP52435 117 aaKnown RBP13.68□□□□□ -0.22
CPSF1-211ENST00000533492 PDK3Q15120 406 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 STK11Q15831 433 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 C6orf10Q5SRN2 563 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 UBE2J2Q8N2K1 259 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 MIER2Q8N344 545 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 ZNF611Q8N823 705 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 PIGXQ8TBF5 258 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 DDIT4LQ96D03 193 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 MUCL1Q96DR8 90 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 Q96MF0 132 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 OR52B2Q96RD2 323 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 TMEM204Q9BSN7 226 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 BDH2Q9BUT1 245 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 CXorf56Q9H5V9 222 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 TPT1P8Q9HAU6 139 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 CACYBPQ9HB71 228 aaKnown RBP13.68□□□□□ -0.22
CPSF1-211ENST00000533492 SDR39U1Q9NRG7 319 aaPredicted RBP13.68□□□□□ -0.22
CPSF1-211ENST00000533492 TRAPPC4Q9Y296 219 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 TMED7Q9Y3B3 224 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 RNF115Q9Y4L5 304 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 NF1P21359 2839 aa13.68□□□□□ -0.22
CPSF1-211ENST00000533492 NIPBLQ6KC79 2804 aaeCLIP13.67□□□□□ -0.22
CPSF1-211ENST00000533492 RAI1Q7Z5J4 1906 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-211ENST00000533492 IGKV3D-15A0A087WSY6 115 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 ADAM11O75078 769 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 CNOT4O95628 575 aaKnown RBP13.67□□□□□ -0.22
CPSF1-211ENST00000533492 ZCCHC18P0CG32 403 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 ETFAP13804 333 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 RPS4Y1P22090 263 aaKnown RBP13.67□□□□□ -0.22
CPSF1-211ENST00000533492 TACR3P29371 465 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 SLC1A3P43003 542 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 PTH2RP49190 550 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 CRISP3P54108 245 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 DSTNP60981 165 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 PLAURQ03405 335 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 NCMAPQ5T1S8 102 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 MRPL2Q5T653 305 aaKnown RBP13.67□□□□□ -0.22
CPSF1-211ENST00000533492 AGBL2Q5U5Z8 902 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 ABLIM2Q6H8Q1 611 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 MSANTD1Q6ZTZ1 278 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 MAVSQ7Z434 540 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 ZNF440Q8IYI8 595 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 OR52P1PQ8NH57 321 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 APH1AQ96BI3 265 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 SMR3AQ99954 134 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 NAA11Q9BSU3 229 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-211ENST00000533492 GSX2Q9BZM3 304 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 SLC6A13Q9NSD5 602 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 THUMPD1Q9NXG2 353 aaKnown RBP13.67□□□□□ -0.22
CPSF1-211ENST00000533492 OSGIN1Q9UJX0 560 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 ZNF232Q9UNY5 417 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 USH1CQ9Y6N9 552 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 VPS13CQ709C8 3753 aa13.67□□□□□ -0.22
CPSF1-211ENST00000533492 CIB4A0PJX0 185 aa13.66□□□□□ -0.22
CPSF1-211ENST00000533492 TMEM72A0PK05 275 aa13.66□□□□□ -0.22
CPSF1-211ENST00000533492 FAM171A2A8MVW0 826 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms