RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 C12orf73Q69YU5 71 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 Q6ZPB1 254 aaPredicted RBP19.3■□□□□ 0.68
VPS28-212ENST00000530836 P3H2Q8IVL5 708 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 PFN4Q8NHR9 129 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 TMEM234Q8WY98 164 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 MEPEQ9NQ76 525 aaPredicted RBP19.3■□□□□ 0.68
VPS28-212ENST00000530836 RNF6Q9Y252 685 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 CDH10Q9Y6N8 788 aa19.3■□□□□ 0.68
VPS28-212ENST00000530836 NUDT14O95848 222 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 GP1BBP13224 206 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 CRHBPP24387 322 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 SOX3P41225 446 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 HTR3AP46098 478 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 HLCSP50747 726 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 GAS1P54826 345 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 CDK5Q00535 292 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 SLC27A4Q6P1M0 643 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 ZNF620Q6ZNG0 422 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 OR10G3Q8NGC4 313 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 SCN3BQ9NY72 215 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 TPRKBQ9Y3C4 175 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 EXPH5Q8NEV8 1989 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 IGLV3-32A0A0A0MS00 114 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 ANKUB1A6NFN9 424 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 SLC1A7O00341 560 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 ADAM10O14672 748 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 RCBTB2O95199 551 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 NTN1O95631 604 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 SMIM18P0DKX4 95 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 APOFQ13790 326 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 GPALPP1Q8IXQ4 340 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 TMEM156Q8N614 296 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 CNIH3Q8TBE1 160 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 BRIX1Q8TDN6 353 aaKnown RBP19.29■□□□□ 0.68
VPS28-212ENST00000530836 GPR119Q8TDV5 335 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 EXTL1Q92935 676 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 RASSF1Q9NS23 344 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 WIF1Q9Y5W5 379 aa19.29■□□□□ 0.68
VPS28-212ENST00000530836 CACNA1BQ00975 2339 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 EFCAB9A8MZ26 197 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 HCN1O60741 890 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 SAGP10523 405 aaPredicted RBP19.28■□□□□ 0.68
VPS28-212ENST00000530836 CASP3P42574 277 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 SNRPGP62308 76 aaKnown RBP19.28■□□□□ 0.68
VPS28-212ENST00000530836 GINS1Q14691 196 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 TMEM236Q5W0B7 351 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 SLC30A6Q6NXT4 461 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 ISLR2Q6UXK2 745 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 PTCHD4Q6ZW05 846 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 KIF18BQ86Y91 864 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 OR8J1Q8NGP2 316 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 ST8SIA1Q92185 356 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 SGCZQ96LD1 299 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 ATP13A2Q9NQ11 1180 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 C20orf141Q9NUB4 165 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 TAS2R10Q9NYW0 307 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 PPP4R1LQ9P1A2 415 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 CHCHD2Q9Y6H1 151 aaPredicted RBP19.28■□□□□ 0.68
VPS28-212ENST00000530836 PCSK5Q92824 1860 aa19.28■□□□□ 0.68
VPS28-212ENST00000530836 SH3D21A4FU49 640 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 MASP2O00187 686 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 KPNA4O00629 521 aaPredicted RBP19.27■□□□□ 0.68
VPS28-212ENST00000530836 CDC42EP2O14613 210 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 BMP7P18075 431 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 MAKP20794 623 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 TACR3P29371 465 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 SLC9A3P48764 834 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 CRYZQ08257 329 aaKnown RBP19.27■□□□□ 0.68
VPS28-212ENST00000530836 Q0VFX4 171 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 AIMP2Q13155 320 aaKnown RBP19.27■□□□□ 0.68
VPS28-212ENST00000530836 LAIR2Q6ISS4 152 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 GRINAQ7Z429 371 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 CLEC1AQ8NC01 280 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 OR52L1Q8NGH7 329 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 SGTBQ96EQ0 304 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 Q96MT0 163 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 SLC38A2Q96QD8 506 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 EGLN3Q9H6Z9 239 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 PLCXD1Q9NUJ7 323 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 TBC1D23Q9NUY8 699 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 HPF1Q9NWY4 346 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 TEKT2Q9UIF3 430 aa19.27■□□□□ 0.68
VPS28-212ENST00000530836 TRIM64CA6NLI5 447 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 ENO4A6NNW6 628 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 MRPS14O60783 128 aaKnown RBP19.26■□□□□ 0.67
VPS28-212ENST00000530836 GABRB1P18505 474 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 EEF1B2P24534 225 aaKnown RBP19.26■□□□□ 0.67
VPS28-212ENST00000530836 CXCR1P25024 350 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 MST1P26927 711 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 RPL5P46777 297 aaKnown RBP19.26■□□□□ 0.67
VPS28-212ENST00000530836 POLR2HP52434 150 aaKnown RBP19.26■□□□□ 0.67
VPS28-212ENST00000530836 NR1H2P55055 460 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 DLX5P56178 289 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 QPRTQ15274 297 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 LINC00303Q3SY05 128 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 IL20RBQ6UXL0 311 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 BPIFB6Q8NFQ5 453 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 OR2T33Q8NG76 320 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 FRMD6Q96NE9 622 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 POLDIP3Q9BY77 421 aaKnown RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms